Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0299 ATGGCGTTTGCAATGCACAAAGATGCGTCGAATAAGCAGATGGATTCGAGCAAGTACGTGAGATATACTCCAGAACAAGTTGAGGCCTTAGAGAGGGTTTATACTGAATGTCCTAAGCCTTGCTCTTTAAGAAGGCAGCAGCTCATTAGGGAGTGCCCTATTTTGTCTAATATTGAACCCAAACAGATCAAAGTTTGGTTTCAGAATCGCAGATGCCGTGAAAAGCAAAGGAAAGAGTCTTCTCGTCTCCAGACAGTGAATAGGAAGTTGAATTCCATGAACAAGTTGTTAATGGAAGAAAATGACCGCTTGCAGAAGCAAGTTTCGCACTTGGTTTATGAAAACGGCTATATGCGTCAACAATTGCACACTACATCTGCGACAACCACAGATAACAGTTGTGAATCGTCAGTGGTCATGAGTGGTCAACGCCAACGACAGCAGAAAGCAACACCTCAGCATCCCCTAAGGGATATCAATGACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGACTGGGTCCAGATAATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTAGCCGTTTCTCGCAACTGCAGTGGAGTAGCGGCACGAGCCTGTGGTCTAGTTAGTCTAGAGCCAGCGAAGGTTGCTGAGATTGTTAAAGATCGCCCTTCCTGGTTTCGAGACTGTAGATCTCTTGATATATTCAGTGTAATACCTACTAGAAATGGGAGCACGATAGAGCTCATTTACATGCAGACGTATGCTCCTACAACATTAGCAGCTGCACGAGACTTCTGGATTCTGAGATATACTACAAGTTTGGAAGATGGCAGCTTAGTGATATGCGAGAGATCATTGGGTTCTTCAACTGGTGGCCCCACAGGGCCTCCACCTTCAGGTTTTGTGAGGGCAGAAATGCTTCCAAGTGGTTATTTAATCCGAGCTTGTGATGGTGGTGGATCAATTATCAATATTGTTGATCATGTCGACTTAGATGCTCAAAGCGTTCCTGAAGTTCTCAGGCCAATTTATGAATCATCCAAGATTCTTGCTCAGAAAATGACCATTGCTGCCTTGCGCCATGTAAGACAAATCGCACAAGAGTCGATTGGAGAGATTCAGTACGGTGGGGGTCGCCAGCCAGCTGTTTTAAGGACATTTAGTCAGAGACTCTGCAGAGGATTCAATGATGCTGTGAATGGATTTGCGGATGATGGCTGGTCACTTATGAGTAATGATGGAGTGGATGATGTGACAATAGTGATAAACTCATCTCCTAGCACATTTCTTGGGACCTGCCACTATAACACAGCTATGTACTCGAGCTTTGGTGGTGGTGTACTTTGTGCTAAGTCATCAATGCTTCTACAGAACGTTCCCCCTGCCTTGCTTGTTCGGTTCCTAAGAGAGCATCGTTCTGAATGGGCTGATTATGGCGTTGATGCCTACTCTGCTGCATGTCTTAGAGCTAGCCCGTTTGCAGTTCCATGTGCAAGGCCCCTTGGATTTCCTAGCAGCCCAGTTATTTTGCCGCTGGCTCACACTGTTGAGCATGAGGAATCCTTGGAGATGGTTCGGCTGGAGGGCCATGCGTTTTCCACTGAAGATATAGCTTTGGCTGGACAAGATATGTACTTACTGCAGCTATGTAGTGGGGTGGATGAAAATTCAGTTGGTGCTTGTGCTCAGCTTGTGTTTGCACCTATTGATGAATCGTTTGCTGATGATGCTCCCTTGTTGCCTTCTGGGTTTCGCGTCACACCATTGGATACCAAAAAGGAAGGACAGGCAACTACTCGGACATTAGATTTGGCCTCTACACTTGAAGTGAGACCTGGTGTTACCCGTCCATCCTCTGAATCCGAATTGAACTATTACAACCTTAGGTCAGTCTTGACTATTGCCTTCCAATTCACTTTTGAGAACCACATGCAAGAGAGTGTGGCTGCAATGGCCCGGCAATATGTACGTAGTGTTGTGGGGTCTGTTCAGAGAGTCTCCATGGCCATTGCCCCCTCACAGCTCAGCTCCCATTTAGTCCCGAAATCACTTCCTGGCTCACCTGAAGCTCTTACCTTGGCTCGATGGATTTGCCGAAGCTACAGGGTCCATGGAGGGGAAGAGCTTTTTCCACTTGAATCCTTATCAGGTGTTTCTATCTTGAAGCAGCTTTGGCATCATTCGGAGGCAATCTTGTGCTGCTCTATCAGAACTAATGCATCTCCTACATTCACATTTGCCAACCAGGCCGGGCTTAACATGCTTGAAACTAGTTTGGTGGCTCTACAAGATATAATGCTCGACATGGTTCTTAATGAAGCTGGCAGGATGGTTCTCTGCTCAGAGTTTTCCAAGATAATGCAACAGGAATTTGCACATCTGCCAGCTGGCATTTGTGCGTCGAGTATGGGCAAGGCGGTGTCTTATGACCGGGCCATTGCATGGAAAGTGCTTGACGACAACGATTCTAATCACTGCTTGGCTCTCATGTTCATAAACTGGTCTTTTCTGTGA 2550 46.63 MAFAMHKDASNKQMDSSKYVRYTPEQVEALERVYTECPKPCSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQTVNRKLNSMNKLLMEENDRLQKQVSHLVYENGYMRQQLHTTSATTTDNSCESSVVMSGQRQRQQKATPQHPLRDINDPAGLLAIAEETLAEFLSKATGTAVDWVQIIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPAKVAEIVKDRPSWFRDCRSLDIFSVIPTRNGSTIELIYMQTYAPTTLAAARDFWILRYTTSLEDGSLVICERSLGSSTGGPTGPPPSGFVRAEMLPSGYLIRACDGGGSIINIVDHVDLDAQSVPEVLRPIYESSKILAQKMTIAALRHVRQIAQESIGEIQYGGGRQPAVLRTFSQRLCRGFNDAVNGFADDGWSLMSNDGVDDVTIVINSSPSTFLGTCHYNTAMYSSFGGGVLCAKSSMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLRASPFAVPCARPLGFPSSPVILPLAHTVEHEESLEMVRLEGHAFSTEDIALAGQDMYLLQLCSGVDENSVGACAQLVFAPIDESFADDAPLLPSGFRVTPLDTKKEGQATTRTLDLASTLEVRPGVTRPSSESELNYYNLRSVLTIAFQFTFENHMQESVAAMARQYVRSVVGSVQRVSMAIAPSQLSSHLVPKSLPGSPEALTLARWICRSYRVHGGEELFPLESLSGVSILKQLWHHSEAILCCSIRTNASPTFTFANQAGLNMLETSLVALQDIMLDMVLNEAGRMVLCSEFSKIMQQEFAHLPAGICASSMGKAVSYDRAIAWKVLDDNDSNHCLALMFINWSFL 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2187418 2193311 - Conep01aG0031700.1 Cone1ag0299 430990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0299 849 FunFam Homeobox-leucine zipper protein REVOLUTA 18 73 - -
Cone1ag0299 849 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677(InterPro)
Cone1ag0299 849 SMART START_1 167 377 IPR002913 GO:0008289(InterPro)
Cone1ag0299 849 Gene3D - 9 84 - -
Cone1ag0299 849 Gene3D - 201 381 IPR023393 -
Cone1ag0299 849 ProSiteProfiles START domain profile. 158 359 IPR002913 GO:0008289(InterPro)
Cone1ag0299 849 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 12 849 IPR044830 GO:0003700(InterPro)
Cone1ag0299 849 SMART HOX_1 15 81 IPR001356 GO:0003677(InterPro)
Cone1ag0299 849 SUPERFAMILY Homeodomain-like 18 79 IPR009057 -
Cone1ag0299 849 Pfam Homeodomain 18 76 IPR001356 GO:0003677(InterPro)
Cone1ag0299 849 SUPERFAMILY Bet v1-like 168 379 - -
Cone1ag0299 849 CDD bZIP 70 109 - -
Cone1ag0299 849 Pfam START domain 168 376 IPR002913 GO:0008289(InterPro)
Cone1ag0299 849 Coils Coil 83 107 - -
Cone1ag0299 849 CDD homeodomain 18 78 IPR001356 GO:0003677(InterPro)
Cone1ag0299 849 Pfam MEKHLA domain 704 848 IPR013978 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0280 Cone-Chr18:1361069 Cone1ag0299 Cone-Chr1:2187418 0 dispersed
Cone1ag0299 Cone-Chr1:2187418 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone1ag0299 Cone-Chr1:2187418 Cone5ag1545 Cone-Chr5:10640417 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45416 PF01823 MACPF 3.70E-12 CL0293 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0299 K09338 - rcu:8265527 1408.66