Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0302 ATGAGTAATCATACACTGGAACTTGGGAGGCCTGTATCAGCTAAAAGAAAATTAAAAGATCTTTTGCTGCAAAAAGATAACCGCAATTGTGCAGATTGTGGTGCTCCAGATCCAAAATGGGCGTCAGCAAATATCGGAGTTTTCATATGCTTAAAATGTTGTGGCGTGCACAGGAGCCTTGGCACACATATATCAAAGGTATTGTCAGTGACACTGGATGAGTGGTCTGATGATGAAATTGATTCCATGATGGAAGTTGGAGGAAATTCCTCGGCCAATGCAATTTACGAGGCTTTTATTCCTGAAGGACATTCTAAGCCCAAACCAGAATCTAGCCATGATGAGCGTACAAAGTTCATTCGGTCTAAGTATGAGCTTCAAAAGTTTTTGAAACCAAGCTTGCGCATTATGTCAAACAATTCTGAGAAAAGCTCACTCCAAGTTAGTTTGTCTAGAAAGCTTTGGGATACTTTTCGTAGCTCAAATTCTTCGCACAACTATGAGGGCATGGTAGAATTTATCGGGTTATTGAAGGTCAAAATTGTAAAAGGCATAAATTTAGCCATTAGAGATATGATGTCAAGCGATCCTTATGTCATATTAAATCTTGGGCAACAGACTGTTCAGACAGCTGTTAAAAAGAGCAACTTGAACCCGGTATGGAATGAGGAACTTATGTTGTCAGTACCTCAGAATTATGGTGCCTTGAAATTGAGTGTGTTTGACTACGACACGTTTTCAGCCGATGACATAATGGGGGAAGCCGAGATTGATCTCCAGCCAATGATAGCATCTGCAATGGCATTTGGAGATGCCGGAATGTTTGGAAACATGCAAATTGGCAAGTGGCTGAAATCACATGATAATGCTCTGGTAAAAGATAGCATTGTCAATATAATTGACGGGAAGGTAAGACAAGAGATGTCAATAAAACTTCAGAATGTTGAGTGTGGAGAATTAGAACTAGAGCTTGAATGGATGCCTCTTGATCAATAG 996 40.06 MSNHTLELGRPVSAKRKLKDLLLQKDNRNCADCGAPDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDEWSDDEIDSMMEVGGNSSANAIYEAFIPEGHSKPKPESSHDERTKFIRSKYELQKFLKPSLRIMSNNSEKSSLQVSLSRKLWDTFRSSNSSHNYEGMVEFIGLLKVKIVKGINLAIRDMMSSDPYVILNLGQQTVQTAVKKSNLNPVWNEELMLSVPQNYGALKLSVFDYDTFSADDIMGEAEIDLQPMIASAMAFGDAGMFGNMQIGKWLKSHDNALVKDSIVNIIDGKVRQEMSIKLQNVECGELELELEWMPLDQ 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2253274 2256870 + Conep01aG0032000.1 Cone1ag0302 430993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0302 331 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 173 331 - -
Cone1ag0302 331 FunFam Arf-GAP with dual PH domain-containing protein 1 10 138 - -
Cone1ag0302 331 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
Cone1ag0302 331 CDD C2_ArfGAP 174 318 - -
Cone1ag0302 331 Gene3D C2 domain 172 331 IPR035892 -
Cone1ag0302 331 ProSiteProfiles C2 domain profile. 157 272 IPR000008 -
Cone1ag0302 331 CDD ArfGap 18 124 - -
Cone1ag0302 331 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096(InterPro)
Cone1ag0302 331 SMART arf_gap_3 16 137 IPR001164 GO:0005096(InterPro)
Cone1ag0302 331 Gene3D Arf GTPase activating protein 7 136 IPR038508 -
Cone1ag0302 331 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 328 IPR035892 -
Cone1ag0302 331 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 2 331 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Cone1ag0302 331 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cone1ag0302 331 Pfam C2 domain 175 261 IPR000008 -
Cone1ag0302 331 SMART C2_3c 176 271 IPR000008 -
Cone1ag0302 331 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
Cone1ag0302 331 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
Cone1ag0302 331 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0302 Cone-Chr1:2253274 Cone5ag0481 Cone-Chr5:2024642 3.98E-110 dispersed
Cone1ag0302 Cone-Chr1:2253274 Cone5ag1543 Cone-Chr5:10615499 1.96E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0302 K12486 - mdm:103446114 543.117