Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0355 ATGACACCGCGTGTAAAAGGCCTGCAGCTTACCCAGGTGCCCGCCGCTGGCCGGAAACCAAAATCAGTTCTCGCCGGAGACATTTCTGATGATCTCGAGGATGTGGGTCTTCTCGATTATAAGTCGTATGGTGAGGACGAGGAGAATTCTGGCAGAATTGAAGAGGGTATGAGAAAGGTTCAAGTTGGAGTCTCTGGTATGACCTGTGCTGCTTGCTCTAACTCTGTCGAGGGAGCTCTTATGTGCGTTAATGGCGTTTTGAGAGCCTCTGTCGCTTTGCTTCAGAACAGAGCTGATGTGGTTTTTGATCCGAATTTGGTCAAGGATGAAGATATCAAGAATGCAATTGAAGATGCTGGGTTTGAAGCTGAGATTCTTCCGGAACCTAGCACTTTTGGAACAAAGCCAAATGGAACTCTAATGGGACAATTTACGATAGGAGGTATGACATGTGCGGCCTGTGTGAACTCTGTCGAAGGTATTTTGAGAGATCTTCCAGGTGTCAAGAGGGCAGTGGTTTCCTTGGCTACTTCATTAGGAGAGGTTGAATATGATCCTTCTGTAATTAGTAAAGATGAAATAGTCAATGCAATTGAAGATGCTGGGTTTGAAGCTTCACTTGTACAGAGCAGTGAGCAGGATAAGATTGTTCTTGGGGTTGGTGGAATATTCAGCGAGATGGATGCCCAATTTTTGGAGGGGATACTTGTGAGCTTGAAAGGAGTGAGAAAATTTGGCTTTGACCGGGATTCAAGAGAACTAGAAGTTCTCTTTGACCCTGAAGTTATCAGTTCTAGATCTTTGGTGGATGGGATAGAGGCAAGAAGCAATGGGGAGTATAAATTACACGTTGTCAGCCCGTATTTGAGAATGACTTCTAAAGATGTTGGAGAAGCCGCAAATATGTTTCGCTTATTCAGCTCGAGTTTGTTTCTCAGTGTCCTGGTCTTTCTCGTCCGGGTAGTTTGTCCTCACATTCCTCTGATATATTCATTATTACTATGGCGATGTGGGCCCTTCCTCATGGATGATTGGTTGAAGTGGGCATTGGTAAGTATTGTCCAATTTGTGATTGGGAAACGCTTCTATGTTGCAGCGGCAAGAGCTCTTAGAAACGGATCAACTAACATGGATGTTTTGGTTGCTTTGGGTACTTCGGCCTCTTACTTCTACTCTGTTTGTGCACTTCTTTATGGTGCAGTTACTGGTTTTTGGTCCCCCACATACTTTGAAACAAGTGCCATGCTCATAACGTTTGTCTTATTGGGGAAGTACTTGGAGTGTCTTGCAAAGGGAAAAACTTCAGATGCCATCAAGAACTTAGTAAAGCTCACCCCCGCCACAACATTGTTGCTTGTAAAAAATAAAGGTGGGGATTTGATAGAAGAAAGGGAAATAGACTCTTTACTAATTCAGCCTGGTGATACTTTGAAAGTTGTTCCTGGTGCAAAGGTTCCAGCTGATGGCATGGTTGTTTGGGGTGCAAGTTATGTAAATGAAAGTATGGTTACTGGTGAAGCTATACCTATTCTTAAGGAGATCAATTCACCAGTTATTGGAGGTACTATTAATTTGCACGGTGCTCTCCATGTACAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGCCAGATCATAAGTTTGGTTGAGACAGCACAGATGTCTAAAGCCCCTATTCAGAAATTTGCTGATTTTGTAGCAAGCGTATTTGTTCCAACAGTTGTTTTCATGGCAATATTGACATTATTGGGTTGGTATATTGGTGGAACTTTTGGAGCTTACCCAGAAAATTGGCTGCCCGCAAATGGAAATTACTTCGTTTTTTCTCTAATGTTTTCAATATCGGTTGTAGTAATTGCCTGCCCCTGTGCACTTGGTTTGGCCACTCCAACTGCTGTCATGGTTGCGACTGGAGTTGGGGCTAATAATGGTGTGTTGATCAAAGGAGGAGATGCTTTAGAAAGGGCTCAGAAGATTACGCATGTGATCTTTGATAAAACGGGGACCCTTACGCAGGGAAAAGCCACTGTAACAACCGCCAAAGTTTTCAACAAGATGGAACGTGCAGAATTCCTTAAGTTGGTAGCTTCTGCAGAGGCTAGCAGCGAACACCCACTGGCAAAAGCAATAGTGGAATATGCACGCCATTTTCATTTCTTTGACGACCCTGCTTCAGCTGAGAACTGTCAAAATCACAGCAAACAGTTGCCTGGATGGCTTTTTGACGTATCAAATTTCACTGCCCTTCCTGGAAGAGGGGTCCAATGCTTTATAGAAGGAAAAAAACTTCTGAGCTGGAAGAAGGTGCCAACACAGGCATACTTGTTGCATATGATGATAACTTGA 2346 43.52 MTPRVKGLQLTQVPAAGRKPKSVLAGDISDDLEDVGLLDYKSYGEDEENSGRIEEGMRKVQVGVSGMTCAACSNSVEGALMCVNGVLRASVALLQNRADVVFDPNLVKDEDIKNAIEDAGFEAEILPEPSTFGTKPNGTLMGQFTIGGMTCAACVNSVEGILRDLPGVKRAVVSLATSLGEVEYDPSVISKDEIVNAIEDAGFEASLVQSSEQDKIVLGVGGIFSEMDAQFLEGILVSLKGVRKFGFDRDSRELEVLFDPEVISSRSLVDGIEARSNGEYKLHVVSPYLRMTSKDVGEAANMFRLFSSSLFLSVLVFLVRVVCPHIPLIYSLLLWRCGPFLMDDWLKWALVSIVQFVIGKRFYVAAARALRNGSTNMDVLVALGTSASYFYSVCALLYGAVTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKNLVKLTPATTLLLVKNKGGDLIEEREIDSLLIQPGDTLKVVPGAKVPADGMVVWGASYVNESMVTGEAIPILKEINSPVIGGTINLHGALHVQATKVGSDTVLSQIISLVETAQMSKAPIQKFADFVASVFVPTVVFMAILTLLGWYIGGTFGAYPENWLPANGNYFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKITHVIFDKTGTLTQGKATVTTAKVFNKMERAEFLKLVASAEASSEHPLAKAIVEYARHFHFFDDPASAENCQNHSKQLPGWLFDVSNFTALPGRGVQCFIEGKKLLSWKKVPTQAYLLHMMIT 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2920289 2927578 + Conep01aG0037500.1 Cone1ag0355 431046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0355 781 ProSitePatterns Heavy-metal-associated domain. 146 175 IPR017969 GO:0046872(InterPro)
Cone1ag0355 781 FunFam Copper-transporting ATPase RAN1 670 761 - -
Cone1ag0355 781 NCBIfam heavy metal translocating P-type ATPase 377 763 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone1ag0355 781 SUPERFAMILY HMA, heavy metal-associated domain 211 274 IPR036163 GO:0046872(InterPro)
Cone1ag0355 781 Gene3D - 668 773 IPR023299 GO:0000166(InterPro)
Cone1ag0355 781 CDD HMA 143 206 IPR006121 GO:0046872(InterPro)
Cone1ag0355 781 Gene3D - 431 553 - -
Cone1ag0355 781 FunFam Copper-exporting P-type ATPase A 56 126 - -
Cone1ag0355 781 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 665 760 IPR023299 GO:0000166(InterPro)
Cone1ag0355 781 ProSitePatterns Heavy-metal-associated domain. 64 94 IPR017969 GO:0046872(InterPro)
Cone1ag0355 781 PRINTS P-type cation-transporting ATPase superfamily signature 499 513 - -
Cone1ag0355 781 PRINTS P-type cation-transporting ATPase superfamily signature 663 677 - -
Cone1ag0355 781 ProSiteProfiles Heavy-metal-associated domain profile. 58 124 IPR006121 GO:0046872(InterPro)
Cone1ag0355 781 FunFam Copper-exporting P-type ATPase A 139 208 - -
Cone1ag0355 781 SUPERFAMILY Calcium ATPase, transduction domain A 463 549 IPR008250 -
Cone1ag0355 781 NCBIfam copper ion binding protein 143 205 IPR006122 GO:0005507(InterPro)
Cone1ag0355 781 NCBIfam copper ion binding protein 59 123 IPR006122 GO:0005507(InterPro)
Cone1ag0355 781 ProSitePatterns E1-E2 ATPases phosphorylation site. 665 671 IPR018303 -
Cone1ag0355 781 PRINTS Copper-transporting ATPase 1 signature 59 84 - -
Cone1ag0355 781 PRINTS Copper-transporting ATPase 1 signature 114 134 - -
Cone1ag0355 781 PRINTS Copper-transporting ATPase 1 signature 85 108 - -
Cone1ag0355 781 SUPERFAMILY HMA, heavy metal-associated domain 136 211 IPR036163 GO:0046872(InterPro)
Cone1ag0355 781 FunFam Copper-transporting ATPase 1, putative 431 553 - -
Cone1ag0355 781 Gene3D - 142 208 - -
Cone1ag0355 781 Pfam Heavy-metal-associated domain 144 204 IPR006121 GO:0046872(InterPro)
Cone1ag0355 781 Pfam Heavy-metal-associated domain 64 122 IPR006121 GO:0046872(InterPro)
Cone1ag0355 781 SUPERFAMILY Calcium ATPase, transmembrane domain M 400 654 IPR023298 -
Cone1ag0355 781 Gene3D - 57 128 - -
Cone1ag0355 781 SUPERFAMILY HMA, heavy metal-associated domain 54 128 IPR036163 GO:0046872(InterPro)
Cone1ag0355 781 NCBIfam HAD-IC family P-type ATPase 416 688 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone1ag0355 781 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 45 764 - -
Cone1ag0355 781 ProSiteProfiles Heavy-metal-associated domain profile. 140 206 IPR006121 GO:0046872(InterPro)
Cone1ag0355 781 Pfam haloacid dehalogenase-like hydrolase 660 723 - -
Cone1ag0355 781 Pfam E1-E2 ATPase 449 642 - -
Cone1ag0355 781 CDD HMA 64 124 IPR006121 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0355 Cone-Chr1:2920289 Cone9ag0775 Cone-Chr9:3710036 2.22E-184 dispersed
Cone1ag0355 Cone-Chr1:2920289 Cone5ag1482 Cone-Chr5:9924778 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0355 K17686 - mdm:103446006 1184.47