Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0359 ATGGGGAAGAAGAAGAAGAGAGTGTCATCGAAGGTTTGGTGCTATTACTGCGATCGTGAATTCGACGACGAGAAGATATTGGTGCAGCATCAGAAGGCGAAACACTTCAAGTGCCATGTCTGTCACAAGAAGCTTTCTACTGCAGGCGGCATGGTCATCCACGTCCTTCAGGTTCACAAGGAAAACGTCACCAAGGTACCTAATGCAAAACCAGAGAGGGAATCAACAGACATTGAGATATATGGAATGCAAGGAATCCCTCCTGACGTCTTGGCAGCACATTATGGAGAGGAAGACGAAGATGCTCCGTCAAAAGTGGCCAAATTAGATATTCCATCCGGTCAGCTTGCTGGAGGTGTAGTACCATCATTGGGTATTGGATATTCTCCTCGACCAGCTTTAGGAGCAATGCGACCTGTTTACAGTTCTCCCATGCCACCACTGCCTGGTGGTGCCTGGCCAGCTGGACCTCGTCCCCAACCTTGGTACCCACAAAACCCTGCTGTTTCAGTTCCTCCCGGTCAATTGGGTTATGCACAACAGCCATTGTTTCCAGTGCAGAATGTGAGGCCACCTCTCATGGCAGCAATAACACCTCCACTCCAGTCTTCACAGGTAACGCCACCGGGGTTGCCATCTTCAGCCACTCCAGTTCCTGTATCACAACCCTTGTTCCCCATTGGTGCCAGTACCAGTATGTCTGCTCATGGTCCACCGTTTCCTGCTCCCCCTATGCTTTCAACAAGCATTCCTTCCAGCTCTCAAGCAGAAGTTACCGGCTCAATGGGAACACACCTGGGAAACAATGCTTCTATGACAAGTAGCTACCAAGTCCAAGGGGTTCCAGGTGGGACATTAAACAATTCACATTCTTATGCCTCTGGTCCTAATACTGGAGGACCATCTATTGGACCACCTCCTGTAATTGCAAACAAAGCTCCTGCTAACCAGCCAGCAACAAATGAAGTCTATTTAGTTTGGGACGATGAGGCTATGTCTATGGAGGAAAGAAGGATGTCCTTAACTAAGTATCAGGTGCATGATGAAACTAGCCAGATGAGTTCAATTGACGCAGCCATAGACAGAAGGATATTGGAAAGCCGGCTTGCTGGGCGAATGACCTTTTAG 1128 48.76 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMVIHVLQVHKENVTKVPNAKPERESTDIEIYGMQGIPPDVLAAHYGEEDEDAPSKVAKLDIPSGQLAGGVVPSLGIGYSPRPALGAMRPVYSSPMPPLPGGAWPAGPRPQPWYPQNPAVSVPPGQLGYAQQPLFPVQNVRPPLMAAITPPLQSSQVTPPGLPSSATPVPVSQPLFPIGASTSMSAHGPPFPAPPMLSTSIPSSSQAEVTGSMGTHLGNNASMTSSYQVQGVPGGTLNNSHSYASGPNTGGPSIGPPPVIANKAPANQPATNEVYLVWDDEAMSMEERRMSLTKYQVHDETSQMSSIDAAIDRRILESRLAGRMTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2971886 2978047 + Conep01aG0037900.1 Cone1ag0359 431050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0359 375 CDD SUF4-like 13 92 - -
Cone1ag0359 375 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Cone1ag0359 375 SMART c2h2final6 12 35 IPR013087 -
Cone1ag0359 375 SMART c2h2final6 36 59 IPR013087 -
Cone1ag0359 375 Gene3D Classic Zinc Finger 1 66 - -
Cone1ag0359 375 PANTHER ZINC FINGER PROTEIN 207 1 373 - GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cone1ag0359 375 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Cone1ag0359 375 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0359 Cone-Chr1:2971886 Cone5ag1397 Cone-Chr5:8632932 1.16E-226 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45421 PF04137 ERO1 4.40E-123 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0359 K27810 - mtr:11415762 553.903