Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0381 ATGGCTCCTTCAGGCTTCAAGTTGTTCTCTCTTGTTGTGTTACTCGCCACTTGTTTCTCATATACTGTCTCTTCTCATGTTTCTCCCAATCTATCACTTGGGAAACAGGCTTCCATTCTTCTTTCCCTCAAACAACGTTTTGAATCCCCCCTTCCACCTCAGCTACAAAGAAGCTGGAATGCATCCAACTATATGTCTCTCTGCTCTTGGATCGGTGTTCTATGCGACCTCACGAGCAAATCAGTGATTTCACTGGATTTATCCAATTGTAACATCTCTGGCTCTTTGTCCCCATCAATCTCACAACTTCGGACCCTTGTCAATCTTACACTCTCCGGAAACAACTTTTCAGGCATTTTCCCGCCACAAATTCACAACCTTCCAAGGCTGAAATTCCTCAACATATCCAACAATCACTTCAGTGGACAGCTCGAGTACTGGGATTTTTCTCGGTTGAACGAGCTTCGAGTTTTAGATGCTTACGACAATGAATTCAATGGCTCGCTTCCGGAAGGTGTTTCTCAACTTCCCAATCTAAACTACTTGAACCTTGGCGGGAATTACTTCACTGGGAAAATACCTCCAAGTTACGGCAGCATGGTACACCTCATTTATCTCTCCCTTGCCGGGAATGATTTAAGCGGTTTCATTCCCAGTGAACTCGGTAATCTTACTAATCTCCACCAGCTCTACTTGGGTTACTACAATGACTTTGATGCCGGAATTCCACCTCAACTTGGGAAGCTTGTGAATTTGTTTCATCTAGACCTTGCGAGCTGTGGGTTAGAGGGTCCAATCCCTCCGGAGCTGGGAAATTTGAACAGGTTGGACACTCTCTTCTTGCAAGCAAATCAGCTCACTGGGTCTCTCCCTCCACAGTTAGGAAACTTGACTAGCTTGATCTCTCTTGATATCTCAATAAATGAATTGACAGGAGAAATCCCAGTTGAGTTTTCTGGGCTATGGAACCTTTCGCTGTTGAACATATTCATGAACAAGTTCCACGGAGAGATCCCTCGTTCACTTTCCGACCTACCTAAGTTAGAAGTGCTCAATCTTTGGCAGAATAACTTCACTGGAGCCATTCCATCTAAGCTTGGTCAGAATGGTAAACTAACTGAGCTCGACTTGTCCACCAATAAGCTCACCGGGTCAATCCCCAAATCTCTATGCTATGGAAGGAGGCTGAAGATCTTGATCCTACTCAACAATTTTCTTTTTGGGCCTCTACCTGATGATCTTGGCCACTGTGAAACACTAGTAAGAGTCCGAATGGGTGACAATTACTTGACAGGATCCATTCCAAATGGACTGCTTTACCTGCCTGAATTATCCCTCATGGAACTGCACAGCAATTATCTGAGTGGAAGCCTTCAACAAGAGATTCTTGTGAACGAAACCTCGAAACTTGGCACCCTCGACCTTTCGAACAATCGTTTATCTGGACCACTTCCTACTTGTATAGGGAACTTTTTGAGCTTGCAGACTCTCCTGTTAAGTGGGAATCAATTCACAGGGCAAATCCCTTCGCAAATAGGTGGACTGAAAAATGTACTGAAGATGGATATGAGTAGGAACAACTTTTCCGGTCCAATACCCCCTGAAATCAGTCATTGTGTGTCACTCACTTATATAGATTTGAGCCAAAATAAACTATCGGGTCCAATTCCCATCCAGATTGCTCAAATCCACATCTTAAATTACATGAACGTGTCCCGGAACTATCTAAATGAAAGCCTCCCAAAGGAAATTGGGTCCATGAAGAGCTTAACATCAGCAGATTTCTCCCACAACAACTTGTCTGGTTCAATACCTGAAACTGGACAATATTCATTTTTCAACTCCACAGCCTTCATAGGAAACACTCAGCTCTGTGGACTATTCTTGAGTCCGTGCAACCAATCATACGTTTCACCCGATCACAGCCGAAATGCAGGGAGCAAATCCAGAGTTACTGGAAGATACAAGCTTGTTTTTGCAATGGGGCTGTTAATATGTTCGTTAATATTCGCAGCTTTAGCAATCATTCAGACAAGAAGGTCAAGGAGGAAGTCGAATTCTTGGAAGCTCACAGCGTTCCAGAAACTAGCATTTGGAAGAGAAGACATCTTAGAATGCATAAAGGATAACAACGTGATCGGGAAAGGTGGTGCGGGGATTGTTTACAAAGGAACAATGCCAAACGGAGAGCACGTAGCTATAAAGAAACTGTTCGGAATAAACAAAGGGTCTTCTTCTCATGATGATAATGGTTTCTCGGCAGAGATTCAGACACTTGGTAAGATCCGGCACAGGAATATTGTTCGGTTGCTGGCATTTTGCTCGAATAAGGTGACCAATTTGCTTGTTTACGAGTACATGCCCAATGGAAGCTTAGGGGAAATGATTCATGGGAAGCAAGGTGCTCATCTCAAGTGGGAAACAAGGCTGAAGATAGCCATAGAAGCTGCAAAAGGACTTTGCTACTTGCACCATGATTGTTCACCCTTAATAATCCATCGAGACGTCAAGTCGAATAACATTTTGTTAAACTCAGAGTACGAGGCTCATGTCGCAGATTTTGGGCTTGCCAAGTTCTTACGAGGAACTGGCACCTCGGAGTGCATGTCTGCCATTGCTGGCTCTTACGGTTACATTGCTCCAGAATATGCATACACATTGAAAGTAGACGAAAAGAGTGATGTATATAGCTTTGGAGTGGTACTTCTTGAGCTTATTACAGGGCGCAGGCCCGTAGGTGATTTTGGGGAAGAAGGTCTAGACATTGTTCAATGGACAAAGATAGAAACAAAGTCGAGCAAGGAAAGGGTTGTGAAGATCCTTGATCGAAGACTTATAAGCAATAATGATATACCAATTGACGAAGCAAAGCAAGTTTTCTTTGTGGCCATGTTATGCGTTGAAGAGCTCAGTGTGGAGCGCCCGACTATGCGAGAAGTCGTTCAGATGCTTGCTCAGGCTCAACATTATAATACTTTCCACATGCAATAA 2991 43.7 MAPSGFKLFSLVVLLATCFSYTVSSHVSPNLSLGKQASILLSLKQRFESPLPPQLQRSWNASNYMSLCSWIGVLCDLTSKSVISLDLSNCNISGSLSPSISQLRTLVNLTLSGNNFSGIFPPQIHNLPRLKFLNISNNHFSGQLEYWDFSRLNELRVLDAYDNEFNGSLPEGVSQLPNLNYLNLGGNYFTGKIPPSYGSMVHLIYLSLAGNDLSGFIPSELGNLTNLHQLYLGYYNDFDAGIPPQLGKLVNLFHLDLASCGLEGPIPPELGNLNRLDTLFLQANQLTGSLPPQLGNLTSLISLDISINELTGEIPVEFSGLWNLSLLNIFMNKFHGEIPRSLSDLPKLEVLNLWQNNFTGAIPSKLGQNGKLTELDLSTNKLTGSIPKSLCYGRRLKILILLNNFLFGPLPDDLGHCETLVRVRMGDNYLTGSIPNGLLYLPELSLMELHSNYLSGSLQQEILVNETSKLGTLDLSNNRLSGPLPTCIGNFLSLQTLLLSGNQFTGQIPSQIGGLKNVLKMDMSRNNFSGPIPPEISHCVSLTYIDLSQNKLSGPIPIQIAQIHILNYMNVSRNYLNESLPKEIGSMKSLTSADFSHNNLSGSIPETGQYSFFNSTAFIGNTQLCGLFLSPCNQSYVSPDHSRNAGSKSRVTGRYKLVFAMGLLICSLIFAALAIIQTRRSRRKSNSWKLTAFQKLAFGREDILECIKDNNVIGKGGAGIVYKGTMPNGEHVAIKKLFGINKGSSSHDDNGFSAEIQTLGKIRHRNIVRLLAFCSNKVTNLLVYEYMPNGSLGEMIHGKQGAHLKWETRLKIAIEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEYEAHVADFGLAKFLRGTGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFGEEGLDIVQWTKIETKSSKERVVKILDRRLISNNDIPIDEAKQVFFVAMLCVEELSVERPTMREVVQMLAQAQHYNTFHMQ 996
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3251741 3255629 - Conep01aG0040100.1 Cone1ag0381 431072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0381 996 SMART LRR_typ_2 152 176 IPR003591 -
Cone1ag0381 996 SMART LRR_typ_2 491 515 IPR003591 -
Cone1ag0381 996 SMART LRR_typ_2 200 224 IPR003591 -
Cone1ag0381 996 SMART LRR_typ_2 273 297 IPR003591 -
Cone1ag0381 996 SMART LRR_typ_2 345 369 IPR003591 -
Cone1ag0381 996 SMART LRR_typ_2 370 393 IPR003591 -
Cone1ag0381 996 SUPERFAMILY RNI-like 84 453 - -
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 676 786 - -
Cone1ag0381 996 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 178 199 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 347 367 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 251 273 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 83 103 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 371 391 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Pfam Leucine Rich Repeat 470 491 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 Gene3D Transferase(Phosphotransferase) domain 1 787 995 - -
Cone1ag0381 996 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Cone1ag0381 996 Pfam Leucine rich repeat 493 552 IPR001611 GO:0005515(InterPro)
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 149 236 - -
Cone1ag0381 996 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 368 987 IPR051564 GO:0016020(PANTHER)
Cone1ag0381 996 SUPERFAMILY Protein kinase-like (PK-like) 701 985 IPR011009 -
Cone1ag0381 996 SMART serkin_6 707 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0381 996 Pfam Protein kinase domain 709 982 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like kinase 35 148 - -
Cone1ag0381 996 Gene3D Ribonuclease Inhibitor 147 238 IPR032675 -
Cone1ag0381 996 Gene3D Ribonuclease Inhibitor 239 343 IPR032675 -
Cone1ag0381 996 Gene3D Ribonuclease Inhibitor 35 146 IPR032675 -
Cone1ag0381 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 831 843 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 787 996 - -
Cone1ag0381 996 ProSiteProfiles Protein kinase domain profile. 707 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 349 636 - -
Cone1ag0381 996 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 237 341 - -
Cone1ag0381 996 Gene3D Ribonuclease Inhibitor 355 636 IPR032675 -
Cone1ag0381 996 SUPERFAMILY L domain-like 386 640 - -
Cone1ag0381 996 Gene3D Phosphorylase Kinase; domain 1 673 786 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0381 Cone-Chr1:3251741 Cone6ag1494 Cone-Chr6:11836339 1.68E-164 dispersed
Cone1ag0381 Cone-Chr1:3251741 Cone13ag0399 Cone-Chr13:3641599 1.48E-157 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82459 PF00664 ABC_membrane 3.50E-30 CL0241 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0381 - - - 0.0