Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0388 ATGGGTGTCTCAGGGAAATGGATTAAGACGTTGATTGGTTTAAAGAAATCAGAAAAGCCAAAGTCTTGGAAGAAGGATGAAAATAAGACAGAAAATACCAAGTTTGGGCATAGGAGAAGTCACTCTGTTGAAATCGATGCTGAAAAAAATCATTACGAGTTTGATGGTAGTGCTATTCAACTAGTTGGAGATGCTACCATTCCTTCAAATCCCAATGCTGCTGGTTCACCTTCAGATTCACTCCACATACGTGATGTGTCATATAGCCAACAGAATGGTAGGGAAGAGTGGGCTGCAATACGCATCCAAACAGGATTTAGAGGATTTCTGGCTAGAAGAGCTCTCCGCGCATTGAAGGGATTGGTAAGACTCCAGGCTCTTGTCAGAGGCCATGCTGTGAGAAAACAGGCTGCTATAACTCTTCGTTGCATGCAAGCATTGGTGAGAGTTCAGGCTCGGGTCAGAGCAAGGCACGTTCGTCTTGCACTGGAAAGTCAAACAGCACAACAAAATATGGAAGACCAACTTCCAAATGAAGCTCAAGTAAAACAAGTAGAAGAAGGATGGTGTGACAGTGTGGGTTCTGTTGAAGAAATTCAAGCCAAGTTGTTAAAGAGGCAGGAGGCTGCGGCCAAGCGTGAGAGGGCGATGGCATATGCCCTGACTCATCAGTGGCAAGCCGGATCAAGGCAGCAAGCTTATCCTCAGGGGTTCGAACCAGATAAAAACAGCTGGGGTTGGAATTGGCTGGAAAGATGGATGGCTGTGCGTCCATGGGAAAACCGCTTTCTTGATACAAATGTCAATGATGGAGCTTTAGTACTTGAGAATGGATCATCCCAGGGTAAAAACGGAATCATAACCCCACTAAAAATTCCAGGCAATAAACCAATTGTTTCAACTCTGCATATGAATCTCTCAAGTCAGAAAACCGGTCCTTCTCATTCCGATAAAGCCAATTCTGGATCAGGCACCAATTCAAGATCACAGAGCAATCCAAAAGAGAGATCCATTCAACCTGACAAACAGGCAAAGAAGCGGCTGTCTCTACCTAGTAGTACTGGGGGGCCTCCATATAATAAAACATCGCGGAACTTGAGCAAAACAGCTGTCAAAGCAACACCAAGCTCTCTAAAGCCCATTAAAGACAAATTGAAGCTCAACGGAAGATCGGATTTGGACCCTTCTAAACCCACTACACAAGCCACTGATGTATAA 1218 44.66 MGVSGKWIKTLIGLKKSEKPKSWKKDENKTENTKFGHRRSHSVEIDAEKNHYEFDGSAIQLVGDATIPSNPNAAGSPSDSLHIRDVSYSQQNGREEWAAIRIQTGFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRLALESQTAQQNMEDQLPNEAQVKQVEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALTHQWQAGSRQQAYPQGFEPDKNSWGWNWLERWMAVRPWENRFLDTNVNDGALVLENGSSQGKNGIITPLKIPGNKPIVSTLHMNLSSQKTGPSHSDKANSGSGTNSRSQSNPKERSIQPDKQAKKRLSLPSSTGGPPYNKTSRNLSKTAVKATPSSLKPIKDKLKLNGRSDLDPSKPTTQATDV 405
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 3380608 3384432 - Conep01aG0040800.1 Cone1ag0388 431079
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0388 405 SMART iq_5 117 138 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 SMART iq_5 94 116 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 MobiDBLite consensus disorder prediction 346 374 - -
Cone1ag0388 405 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 MobiDBLite consensus disorder prediction 19 39 - -
Cone1ag0388 405 MobiDBLite consensus disorder prediction 306 405 - -
Cone1ag0388 405 ProSiteProfiles IQ motif profile. 95 123 - -
Cone1ag0388 405 ProSiteProfiles IQ motif profile. 119 146 - -
Cone1ag0388 405 Gene3D - 96 137 - -
Cone1ag0388 405 MobiDBLite consensus disorder prediction 306 337 - -
Cone1ag0388 405 FunFam IQ-domain 11 94 145 - -
Cone1ag0388 405 PANTHER IQ-DOMAIN 5-RELATED 5 360 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1287 Cone-Chr13:9640477 Cone1ag0388 Cone-Chr1:3380608 8.70E-30 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone1ag0388 Cone-Chr1:3380608 4.07E-44 dispersed
Cone18ag0502 Cone-Chr18:2449046 Cone1ag0388 Cone-Chr1:3380608 8.30E-32 dispersed
Cone1ag0191 Cone-Chr1:1095694 Cone1ag0388 Cone-Chr1:3380608 5.99E-38 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone20ag0275 Cone-Chr20:1221713 7.15E-48 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone11ag1428 Cone-Chr11:10201611 3.71E-141 wgd
Cone1ag0388 Cone-Chr1:3380608 Cone18ag0162 Cone-Chr18:847631 4.02E-141 wgd
Cone1ag0388 Cone-Chr1:3380608 Cone5ag1312 Cone-Chr5:7581605 2.27E-244 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0388 - - - 0.0