Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0388 ATGGGTGTCTCAGGGAAATGGATTAAGACGTTGATTGGTTTAAAGAAATCAGAAAAGCCAAAGTCTTGGAAGAAGGATGAAAATAAGACAGAAAATACCAAGTTTGGGCATAGGAGAAGTCACTCTGTTGAAATCGATGCTGAAAAAAATCATTACGAGTTTGATGGTAGTGCTATTCAACTAGTTGGAGATGCTACCATTCCTTCAAATCCCAATGCTGCTGGTTCACCTTCAGATTCACTCCACATACGTGATGTGTCATATAGCCAACAGAATGGTAGGGAAGAGTGGGCTGCAATACGCATCCAAACAGGATTTAGAGGATTTCTGGCTAGAAGAGCTCTCCGCGCATTGAAGGGATTGGTAAGACTCCAGGCTCTTGTCAGAGGCCATGCTGTGAGAAAACAGGCTGCTATAACTCTTCGTTGCATGCAAGCATTGGTGAGAGTTCAGGCTCGGGTCAGAGCAAGGCACGTTCGTCTTGCACTGGAAAGTCAAACAGCACAACAAAATATGGAAGACCAACTTCCAAATGAAGCTCAAGTAAAACAAGTAGAAGAAGGATGGTGTGACAGTGTGGGTTCTGTTGAAGAAATTCAAGCCAAGTTGTTAAAGAGGCAGGAGGCTGCGGCCAAGCGTGAGAGGGCGATGGCATATGCCCTGACTCATCAGTGGCAAGCCGGATCAAGGCAGCAAGCTTATCCTCAGGGGTTCGAACCAGATAAAAACAGCTGGGGTTGGAATTGGCTGGAAAGATGGATGGCTGTGCGTCCATGGGAAAACCGCTTTCTTGATACAAATGTCAATGATGGAGCTTTAGTACTTGAGAATGGATCATCCCAGGGTAAAAACGGAATCATAACCCCACTAAAAATTCCAGGCAATAAACCAATTGTTTCAACTCTGCATATGAATCTCTCAAGTCAGAAAACCGGTCCTTCTCATTCCGATAAAGCCAATTCTGGATCAGGCACCAATTCAAGATCACAGAGCAATCCAAAAGAGAGATCCATTCAACCTGACAAACAGGCAAAGAAGCGGCTGTCTCTACCTAGTAGTACTGGGGGGCCTCCATATAATAAAACATCGCGGAACTTGAGCAAAACAGCTGTCAAAGCAACACCAAGCTCTCTAAAGCCCATTAAAGACAAATTGAAGCTCAACGGAAGATCGGATTTGGACCCTTCTAAACCCACTACACAAGCCACTGATGTATAA 1218 44.66 MGVSGKWIKTLIGLKKSEKPKSWKKDENKTENTKFGHRRSHSVEIDAEKNHYEFDGSAIQLVGDATIPSNPNAAGSPSDSLHIRDVSYSQQNGREEWAAIRIQTGFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRLALESQTAQQNMEDQLPNEAQVKQVEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALTHQWQAGSRQQAYPQGFEPDKNSWGWNWLERWMAVRPWENRFLDTNVNDGALVLENGSSQGKNGIITPLKIPGNKPIVSTLHMNLSSQKTGPSHSDKANSGSGTNSRSQSNPKERSIQPDKQAKKRLSLPSSTGGPPYNKTSRNLSKTAVKATPSSLKPIKDKLKLNGRSDLDPSKPTTQATDV 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3380608 3384432 - Conep01aG0040800.1 Cone1ag0388 431079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0388 405 SMART iq_5 117 138 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 SMART iq_5 94 116 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 MobiDBLite consensus disorder prediction 346 374 - -
Cone1ag0388 405 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515(InterPro)
Cone1ag0388 405 MobiDBLite consensus disorder prediction 19 39 - -
Cone1ag0388 405 MobiDBLite consensus disorder prediction 306 405 - -
Cone1ag0388 405 ProSiteProfiles IQ motif profile. 95 123 - -
Cone1ag0388 405 ProSiteProfiles IQ motif profile. 119 146 - -
Cone1ag0388 405 Gene3D - 96 137 - -
Cone1ag0388 405 MobiDBLite consensus disorder prediction 306 337 - -
Cone1ag0388 405 FunFam IQ-domain 11 94 145 - -
Cone1ag0388 405 PANTHER IQ-DOMAIN 5-RELATED 5 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0388 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1287 Cone-Chr13:9640477 Cone1ag0388 Cone-Chr1:3380608 8.70E-30 dispersed
Cone17ag0933 Cone-Chr17:7298473 Cone1ag0388 Cone-Chr1:3380608 4.07E-44 dispersed
Cone18ag0502 Cone-Chr18:2449046 Cone1ag0388 Cone-Chr1:3380608 8.30E-32 dispersed
Cone1ag0191 Cone-Chr1:1095694 Cone1ag0388 Cone-Chr1:3380608 5.99E-38 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone20ag0275 Cone-Chr20:1221713 7.15E-48 dispersed
Cone1ag0388 Cone-Chr1:3380608 Cone11ag1428 Cone-Chr11:10201611 3.71E-141 wgd
Cone1ag0388 Cone-Chr1:3380608 Cone18ag0162 Cone-Chr18:847631 4.02E-141 wgd
Cone1ag0388 Cone-Chr1:3380608 Cone5ag1312 Cone-Chr5:7581605 2.27E-244 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone5ag0328 . 91 268 IQD Protein Family AT3G09710 53.7 1.9e-48 191.0
Cone18ag0502 . 1 459 IQD Protein Family AT3G52290 53.2 6.7e-93 338.6
Cone5ag0328 . 73 293 IQD Protein Family AT2G26410 52.0 6.2e-48 189.5
Cone18ag0162 . 1 392 IQD Protein Family AT3G22190 59.9 3.4e-97 352.8
Cone11ag1428 . 1 385 IQD Protein Family AT3G22190 59.1 7.3e-92 335.1
Cone1ag0388 . 1 397 IQD Protein Family AT3G22190 53.0 1.4e-90 330.9
Cone5ag1312 . 1 397 IQD Protein Family AT3G22190 51.6 2.3e-85 313.5
Cone4ag1669 . 2 415 IQD Protein Family AT2G26180 57.2 2.9e-101 366.3
Cone20ag0275 . 4 391 IQD Protein Family AT2G26180 58.8 2.5e-100 363.2
Cone17ag0933 . 4 391 IQD Protein Family AT2G26180 57.0 7.5e-97 351.7
Cone14ag1038 . 44 231 IQD Protein Family AT2G33990 54.5 1.3e-43 174.1
Cone14ag1038 . 19 228 IQD Protein Family AT3G15050 55.2 2.3e-51 199.9
Cone15ag1024 . 36 229 IQD Protein Family AT3G15050 56.2 5.0e-51 198.7
Cone18ag0985 . 1 527 IQD Protein Family AT4G00820 50.4 4.6e-115 412.5
Cone4ag0762 . 1 383 IQD Protein Family AT3G16490 50.3 3.0e-63 240.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42