Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag0388 | ATGGGTGTCTCAGGGAAATGGATTAAGACGTTGATTGGTTTAAAGAAATCAGAAAAGCCAAAGTCTTGGAAGAAGGATGAAAATAAGACAGAAAATACCAAGTTTGGGCATAGGAGAAGTCACTCTGTTGAAATCGATGCTGAAAAAAATCATTACGAGTTTGATGGTAGTGCTATTCAACTAGTTGGAGATGCTACCATTCCTTCAAATCCCAATGCTGCTGGTTCACCTTCAGATTCACTCCACATACGTGATGTGTCATATAGCCAACAGAATGGTAGGGAAGAGTGGGCTGCAATACGCATCCAAACAGGATTTAGAGGATTTCTGGCTAGAAGAGCTCTCCGCGCATTGAAGGGATTGGTAAGACTCCAGGCTCTTGTCAGAGGCCATGCTGTGAGAAAACAGGCTGCTATAACTCTTCGTTGCATGCAAGCATTGGTGAGAGTTCAGGCTCGGGTCAGAGCAAGGCACGTTCGTCTTGCACTGGAAAGTCAAACAGCACAACAAAATATGGAAGACCAACTTCCAAATGAAGCTCAAGTAAAACAAGTAGAAGAAGGATGGTGTGACAGTGTGGGTTCTGTTGAAGAAATTCAAGCCAAGTTGTTAAAGAGGCAGGAGGCTGCGGCCAAGCGTGAGAGGGCGATGGCATATGCCCTGACTCATCAGTGGCAAGCCGGATCAAGGCAGCAAGCTTATCCTCAGGGGTTCGAACCAGATAAAAACAGCTGGGGTTGGAATTGGCTGGAAAGATGGATGGCTGTGCGTCCATGGGAAAACCGCTTTCTTGATACAAATGTCAATGATGGAGCTTTAGTACTTGAGAATGGATCATCCCAGGGTAAAAACGGAATCATAACCCCACTAAAAATTCCAGGCAATAAACCAATTGTTTCAACTCTGCATATGAATCTCTCAAGTCAGAAAACCGGTCCTTCTCATTCCGATAAAGCCAATTCTGGATCAGGCACCAATTCAAGATCACAGAGCAATCCAAAAGAGAGATCCATTCAACCTGACAAACAGGCAAAGAAGCGGCTGTCTCTACCTAGTAGTACTGGGGGGCCTCCATATAATAAAACATCGCGGAACTTGAGCAAAACAGCTGTCAAAGCAACACCAAGCTCTCTAAAGCCCATTAAAGACAAATTGAAGCTCAACGGAAGATCGGATTTGGACCCTTCTAAACCCACTACACAAGCCACTGATGTATAA | 1218 | 44.66 | MGVSGKWIKTLIGLKKSEKPKSWKKDENKTENTKFGHRRSHSVEIDAEKNHYEFDGSAIQLVGDATIPSNPNAAGSPSDSLHIRDVSYSQQNGREEWAAIRIQTGFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARHVRLALESQTAQQNMEDQLPNEAQVKQVEEGWCDSVGSVEEIQAKLLKRQEAAAKRERAMAYALTHQWQAGSRQQAYPQGFEPDKNSWGWNWLERWMAVRPWENRFLDTNVNDGALVLENGSSQGKNGIITPLKIPGNKPIVSTLHMNLSSQKTGPSHSDKANSGSGTNSRSQSNPKERSIQPDKQAKKRLSLPSSTGGPPYNKTSRNLSKTAVKATPSSLKPIKDKLKLNGRSDLDPSKPTTQATDV | 405 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3380608 | 3384432 | - | Conep01aG0040800.1 | Cone1ag0388 | 431079 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag0388 | 405 | SMART | iq_5 | 117 | 138 | IPR000048 | GO:0005515(InterPro) | |
| Cone1ag0388 | 405 | SMART | iq_5 | 94 | 116 | IPR000048 | GO:0005515(InterPro) | |
| Cone1ag0388 | 405 | MobiDBLite | consensus disorder prediction | 346 | 374 | - | - | |
| Cone1ag0388 | 405 | Pfam | IQ calmodulin-binding motif | 97 | 116 | IPR000048 | GO:0005515(InterPro) | |
| Cone1ag0388 | 405 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
| Cone1ag0388 | 405 | MobiDBLite | consensus disorder prediction | 306 | 405 | - | - | |
| Cone1ag0388 | 405 | ProSiteProfiles | IQ motif profile. | 95 | 123 | - | - | |
| Cone1ag0388 | 405 | ProSiteProfiles | IQ motif profile. | 119 | 146 | - | - | |
| Cone1ag0388 | 405 | Gene3D | - | 96 | 137 | - | - | |
| Cone1ag0388 | 405 | MobiDBLite | consensus disorder prediction | 306 | 337 | - | - | |
| Cone1ag0388 | 405 | FunFam | IQ-domain 11 | 94 | 145 | - | - | |
| Cone1ag0388 | 405 | PANTHER | IQ-DOMAIN 5-RELATED | 5 | 360 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone13ag1287 | Cone-Chr13:9640477 | Cone1ag0388 | Cone-Chr1:3380608 | 8.70E-30 | dispersed | |
| Cone17ag0933 | Cone-Chr17:7298473 | Cone1ag0388 | Cone-Chr1:3380608 | 4.07E-44 | dispersed | |
| Cone18ag0502 | Cone-Chr18:2449046 | Cone1ag0388 | Cone-Chr1:3380608 | 8.30E-32 | dispersed | |
| Cone1ag0191 | Cone-Chr1:1095694 | Cone1ag0388 | Cone-Chr1:3380608 | 5.99E-38 | dispersed | |
| Cone1ag0388 | Cone-Chr1:3380608 | Cone20ag0275 | Cone-Chr20:1221713 | 7.15E-48 | dispersed | |
| Cone1ag0388 | Cone-Chr1:3380608 | Cone11ag1428 | Cone-Chr11:10201611 | 3.71E-141 | wgd | |
| Cone1ag0388 | Cone-Chr1:3380608 | Cone18ag0162 | Cone-Chr18:847631 | 4.02E-141 | wgd | |
| Cone1ag0388 | Cone-Chr1:3380608 | Cone5ag1312 | Cone-Chr5:7581605 | 2.27E-244 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag0388 | - | - | - | 0.0 |