Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0408 ATGGCTGTAGCGGCACCAGGGCAGCTCAACCTCAATGAGTCCCCTACATGGGGATCTAGAAGCGTCGATTGCTTTGAAAAATTGGAAAAGATTGGCGAGGGAACTTATGGTCAAGTTTTCATGGCCAGAGAAATAAAGACTGGAGAAATTGTTGCTTTGAAGAAAATACGAATGGACAATGAAAGAGAGGGGTTCCCAATTACTGCCATACGAGAAATCAAAATCCTAAAAAAGCTGCATCATGAAAATGTAGTTAAGCTGAAAGAGATTGTGACGTCACCAGGTCCTGAGAAAGATGAGCAGGGAAGACCAGATGGGAACAAATATAAAGGCGGCATCTACATGGTTTTTGAGTACATGGACCATGATTTGACAGGTCTTTCTGATCGTCCTGGGATGAAATTTTCAGTTCCTCAGATTAAGTGCTACATGAAACAGCTTTTGACCGGGCTTTACTACTGCCATGTAAATCAAGTACTACATCGGGATATCAAAGGCTCTAATCTTCTTATAGACAATGAAGGAAATTTGAAGCTTGCAGATTTTGGGCTTGCTAGATCATTCTCTAATGATCACAATGCTAATCTTACGAACCGTGTAATTACTTTGTGGTATAGGCCTCCAGAATTGCTACTTGGGACAACAAGGTATGGTCCTGCTGTTGATATGTGGTCTGTTGGTTGTATCTTTGCTGAGCTTCTTCATGGGAAACCGATTTTCCCTGGTAAAGATGAGCCTGAGCAATTAAATAAGATCTTTGAGTTGTGTGGAACTCCAGATGAGGTTAATTGGCCTGGGGTTTCCAAGATTCCTTGGTATAACAATTTGAAACCTACAAGGCCGATGAAGAGAAGACTTAGAGAGGTTTTCAGGAATTTTGACCGTCATGCTTTAGAGTTGCTGGAGGGGATGCTGACTCTTGATCCCTCTCAGAGGATATCTGCAAAGGACGCTCTTGATGCTGAGTACTTTTGGACTGAACCATTACCATGTGATCCCAAGAGTTTACCGAAATGTGAATCATCCCATGAGTTCCAAACCAAGAAAAAACGGCAGCAGCAAAGACAACAGGAAGAAAATGCAAAACGTCAGAAATTGCAACATCCACAACAACACACCCGCCCGCCAATCCAGCAATCGGGCCAAGCCCATGCCCAGTTACGGCCTGGCCCAAACCAGCCATTGCATAGCTCTCAACCCCCTGTTGCTGCTGGGGGCCCTGGTGGCCACCATTTTGGAAAGCCTCGTGGTGGACCCTCTGGTGGGCCAGGCCGTTATCCACCGAGTGCAAATCCTGCTGGAGGATACAATCACCCTAATCGCGGCGGTCAAGGTGGTGGTGGTGGTAGTGGTTATGGTGGAAGTGGTCAGTATCCTCAGGGCGGTGGTCGAGGTGCACCCTATGGCTCTAGTGGTGTGGGTCCCAGGGGTGGGGGAGGGAGCGGGTATGGAGTTGGTGCTCCGCCAAACTACCCTCAGGGTGGTCCTTATGGTGGTTCTAGTGGTGGTGGTGGTCGTGGGTCAAACCTGATGGGGGGAAACCGGAACCAACAATATGGATGGCAGCAGTAA 1572 47.33 MAVAAPGQLNLNESPTWGSRSVDCFEKLEKIGEGTYGQVFMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVVKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLSDRPGMKFSVPQIKCYMKQLLTGLYYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGTPDEVNWPGVSKIPWYNNLKPTRPMKRRLREVFRNFDRHALELLEGMLTLDPSQRISAKDALDAEYFWTEPLPCDPKSLPKCESSHEFQTKKKRQQQRQQEENAKRQKLQHPQQHTRPPIQQSGQAHAQLRPGPNQPLHSSQPPVAAGGPGGHHFGKPRGGPSGGPGRYPPSANPAGGYNHPNRGGQGGGGGSGYGGSGQYPQGGGRGAPYGSSGVGPRGGGGSGYGVGAPPNYPQGGPYGGSSGGGGRGSNLMGGNRNQQYGWQQ 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3554336 3559498 + Conep01aG0042800.1 Cone1ag0408 431099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0408 523 FunFam Cyclin-dependent kinase C-2 122 364 - -
Cone1ag0408 523 MobiDBLite consensus disorder prediction 335 523 - -
Cone1ag0408 523 FunFam Cyclin-dependent kinase C-2 12 121 - -
Cone1ag0408 523 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Cone1ag0408 523 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0408 523 SMART serkin_6 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0408 523 MobiDBLite consensus disorder prediction 337 366 - -
Cone1ag0408 523 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0408 523 MobiDBLite consensus disorder prediction 370 399 - -
Cone1ag0408 523 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
Cone1ag0408 523 PANTHER CELL DIVISION PROTEIN KINASE 25 324 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone1ag0408 523 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Cone1ag0408 523 CDD STKc_CDK9_like 25 324 - -
Cone1ag0408 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0408 523 SUPERFAMILY Protein kinase-like (PK-like) 18 332 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0820 Cone-Chr10:4167407 Cone1ag0408 Cone-Chr1:3554336 3.05E-295 dispersed
Cone1ag0408 Cone-Chr1:3554336 Cone3ag0846 Cone-Chr3:4340825 2.72E-296 dispersed
Cone1ag0408 Cone-Chr1:3554336 Cone5ag1291 Cone-Chr5:7206336 5.79E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82460 PF02544 Steroid_dh 1.60E-25 CL0115 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0408 K08819 - mdm:103435440 805.053