Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0412 | ATGTCTTCTAATGGCAGCTCCTGCAAGGAAATGACCAAATCCCGTACTACATTTGTGGATCACGAATTAGTAACATCTAATCCGGAGTTGAAAATCACTTCCCCCTTCAGAAAAGGCTCTCCCGGTTTAAGCTGGAATCATGGAATCTCATCAACTAATGACGTGCAAGACTTGCTTGAGTGCCCGGTTTGCATGAATCTAATGTATCCTCCAATCTACCAGTGTCCAAACGGGCACACTCTTTGTTCAAACTGCAAGGCTCGTGTCCTCAACAGCTGTCCCACTTGCCGGGACGATCTGGGAAATATAAGGTGCTTGGTGTTGGAAAAGGTGGCGGAGTCATTGGAGCTCCCGTGCCGATACCAGTTTGTGGGTTGTCACGACATATTTCCTTTTTACAGCAAGCTCAAACATGAGAAGAGTTGTAAGTATCGCCCCTACAACTGCCCTTATACCGGGGATGAATGTTCGGTTACGGGTGATGTTTCTTACCTTATCTCTCACCTCAAAGATGACCACAAGGTTGATATCCATAATGGATCCACTTTCAACCATAGATATATGAAATCCAACCCCCTCGAAGTCGAAAATGCTACATGGATGCTAACCGTTTTCAACTGCTTTGAGAAATCGTTCTGTTTGCACTTTGAGGCATTCCATATAGGGACGGCGCCAGTTTACATGGCCTTTGTTCGGTTCATGGGGGATGATGAAGAGGCAAGACAATTTAGTTATTGTCTGGAAGTTGGAGGAAACGGGAGAAAGCTTGTATGGCAAGGTATCCCGAGGAGCACACGGGATAGTCATAAGAAGGTCCGGGATAGTCAAGATGGACTGATTATTCAGAGGAGCTTGGCCCTCTTCATTTCGGGAAGTGATAGGGAACTGAAGTTGAAGGTAGCTGGTCGGATATGGAGAGAACGATGA | 927 | 46.06 | MSSNGSSCKEMTKSRTTFVDHELVTSNPELKITSPFRKGSPGLSWNHGISSTNDVQDLLECPVCMNLMYPPIYQCPNGHTLCSNCKARVLNSCPTCRDDLGNIRCLVLEKVAESLELPCRYQFVGCHDIFPFYSKLKHEKSCKYRPYNCPYTGDECSVTGDVSYLISHLKDDHKVDIHNGSTFNHRYMKSNPLEVENATWMLTVFNCFEKSFCLHFEAFHIGTAPVYMAFVRFMGDDEEARQFSYCLEVGGNGRKLVWQGIPRSTRDSHKKVRDSQDGLIIQRSLALFISGSDRELKLKVAGRIWRER | 308 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3596196 | 3598594 | - | Conep01aG0043200.1 | Cone1ag0412 | 431103 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0412 | 308 | ProSiteProfiles | Zinc finger RING-type profile. | 61 | 97 | IPR001841 | - | |
Cone1ag0412 | 308 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 169 | IPR013083 | - | |
Cone1ag0412 | 308 | ProSiteProfiles | Zinc finger SIAH-type profile. | 114 | 174 | IPR013010 | GO:0008270(InterPro) | |
Cone1ag0412 | 308 | Pfam | Sina, TRAF-like domain | 205 | 300 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cone1ag0412 | 308 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 103 | IPR013083 | - | |
Cone1ag0412 | 308 | CDD | RING-HC_SIAHs | 59 | 97 | - | - | |
Cone1ag0412 | 308 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 172 | 301 | IPR008974 | GO:0005515(InterPro) | |
Cone1ag0412 | 308 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 170 | 301 | - | - | |
Cone1ag0412 | 308 | Pfam | Sina, zinc finger | 110 | 185 | - | - | |
Cone1ag0412 | 308 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 61 | 96 | IPR049548 | - | |
Cone1ag0412 | 308 | SUPERFAMILY | TRAF domain-like | 114 | 305 | - | - | |
Cone1ag0412 | 308 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 37 | 303 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cone1ag0412 | 308 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 111 | 169 | - | - | |
Cone1ag0412 | 308 | SUPERFAMILY | RING/U-box | 54 | 101 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0412 | Cone-Chr1:3596196 | Cone3ag0097 | Cone-Chr3:554710 | 5.46E-162 | dispersed | |
Cone1ag0412 | Cone-Chr1:3596196 | Cone13ag0520 | Cone-Chr13:5506266 | 9.27E-138 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0412 | K04506 | - | cit:102616953 | 499.59 |