Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0412 ATGTCTTCTAATGGCAGCTCCTGCAAGGAAATGACCAAATCCCGTACTACATTTGTGGATCACGAATTAGTAACATCTAATCCGGAGTTGAAAATCACTTCCCCCTTCAGAAAAGGCTCTCCCGGTTTAAGCTGGAATCATGGAATCTCATCAACTAATGACGTGCAAGACTTGCTTGAGTGCCCGGTTTGCATGAATCTAATGTATCCTCCAATCTACCAGTGTCCAAACGGGCACACTCTTTGTTCAAACTGCAAGGCTCGTGTCCTCAACAGCTGTCCCACTTGCCGGGACGATCTGGGAAATATAAGGTGCTTGGTGTTGGAAAAGGTGGCGGAGTCATTGGAGCTCCCGTGCCGATACCAGTTTGTGGGTTGTCACGACATATTTCCTTTTTACAGCAAGCTCAAACATGAGAAGAGTTGTAAGTATCGCCCCTACAACTGCCCTTATACCGGGGATGAATGTTCGGTTACGGGTGATGTTTCTTACCTTATCTCTCACCTCAAAGATGACCACAAGGTTGATATCCATAATGGATCCACTTTCAACCATAGATATATGAAATCCAACCCCCTCGAAGTCGAAAATGCTACATGGATGCTAACCGTTTTCAACTGCTTTGAGAAATCGTTCTGTTTGCACTTTGAGGCATTCCATATAGGGACGGCGCCAGTTTACATGGCCTTTGTTCGGTTCATGGGGGATGATGAAGAGGCAAGACAATTTAGTTATTGTCTGGAAGTTGGAGGAAACGGGAGAAAGCTTGTATGGCAAGGTATCCCGAGGAGCACACGGGATAGTCATAAGAAGGTCCGGGATAGTCAAGATGGACTGATTATTCAGAGGAGCTTGGCCCTCTTCATTTCGGGAAGTGATAGGGAACTGAAGTTGAAGGTAGCTGGTCGGATATGGAGAGAACGATGA 927 46.06 MSSNGSSCKEMTKSRTTFVDHELVTSNPELKITSPFRKGSPGLSWNHGISSTNDVQDLLECPVCMNLMYPPIYQCPNGHTLCSNCKARVLNSCPTCRDDLGNIRCLVLEKVAESLELPCRYQFVGCHDIFPFYSKLKHEKSCKYRPYNCPYTGDECSVTGDVSYLISHLKDDHKVDIHNGSTFNHRYMKSNPLEVENATWMLTVFNCFEKSFCLHFEAFHIGTAPVYMAFVRFMGDDEEARQFSYCLEVGGNGRKLVWQGIPRSTRDSHKKVRDSQDGLIIQRSLALFISGSDRELKLKVAGRIWRER 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3596196 3598594 - Conep01aG0043200.1 Cone1ag0412 431103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0412 308 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Cone1ag0412 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 169 IPR013083 -
Cone1ag0412 308 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270(InterPro)
Cone1ag0412 308 Pfam Sina, TRAF-like domain 205 300 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cone1ag0412 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 103 IPR013083 -
Cone1ag0412 308 CDD RING-HC_SIAHs 59 97 - -
Cone1ag0412 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 172 301 IPR008974 GO:0005515(InterPro)
Cone1ag0412 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 301 - -
Cone1ag0412 308 Pfam Sina, zinc finger 110 185 - -
Cone1ag0412 308 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 61 96 IPR049548 -
Cone1ag0412 308 SUPERFAMILY TRAF domain-like 114 305 - -
Cone1ag0412 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 303 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cone1ag0412 308 FunFam E3 ubiquitin-protein ligase SINAT3 111 169 - -
Cone1ag0412 308 SUPERFAMILY RING/U-box 54 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0412 Cone-Chr1:3596196 Cone3ag0097 Cone-Chr3:554710 5.46E-162 dispersed
Cone1ag0412 Cone-Chr1:3596196 Cone13ag0520 Cone-Chr13:5506266 9.27E-138 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0412 K04506 - cit:102616953 499.59