Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0418 ATGGATCAAGACCAAGACGATTCAAGTGTGATTTCCAAGGCAAAGATGAACGTTATGATCGAAAGCATTTCGGCCGATAACTCAAACAACAACAACACAAATAACATGTCGAACAAGCGACCAAGGCATGATGTTTCTCCAAAATTCAAAGGCGTTGTTTCGCAAAAAAACGGTCATTGGGGAGCACAAATATATGCAAACCATCAAAGGATTTGGCTCGGAACCTTTAAATCGGAGAAAGAGGCGGCCCTGGCTTATGATAGCGCTTCAATCAAGCTTAGGAGCAGTGATAATTATACTTCGTTGCATCGTAATTTTCCATGCATAAATAGCACTTCTGAGGAGCATAATTTCAAAAACCAAAATACGACAGAAGTTTTGCTTAACATGATAAGAGATAGGTCATATCCATCAAAATTTGCAGCCTTTTTGAGGGCTCAATCTCTAAACGAAGAAGTGGGTATTAGTCTCAAGCTAACTAGGGTTAATGGGTGCGGTTCAAAATTTTCGTGTGCCCAACTTTTCCAAAAGGAATTGACACCAAGTGATGTGGGTAAGCTTAATAGACTTGTTATTCCAAAGAAATATGCCGTCAAGTATTTTCCATGCATTAGTGATAACCAAAACATGGAGGAACTTACATTCAACAACAACAATACTAACGGTGGGGTTAATACAGAAGATATTGAGCTTGCTTTCTATGATAGGATGGTAAAGTTATGGAAATTTCGATATTGTTATTGGAAGAGTAGCCAAAGTTTCGTTTTTACACGAGGATGGAACCGATTCGTGAAGGAGAAGAAATTAAAGGCAAACGATGTTATTATGTTCTATACGTGTGAAGAAGGTGATAAGGAAGATAATCATCAAAAGGGTAATGCATTTTGCTTAATTGATGTGATTTATAGTAGTAGCGGAAATGTTCAAGACCAAGGCAAAAGTTTTAATGACTTTTCGGGTCATCATCAAGATCATGTTAATTATCAGTTCAATGAGATGCAGATGGAGGAAGAACATTGTCAAGAGAAGAAGGTTTTGAAAGGTTTGAGTGCATGTCAAAGTGTTGGAGAAAAAGGGTTTAAGCTCTTTGGGGTGCATATTAAATGA 1107 37.67 MDQDQDDSSVISKAKMNVMIESISADNSNNNNTNNMSNKRPRHDVSPKFKGVVSQKNGHWGAQIYANHQRIWLGTFKSEKEAALAYDSASIKLRSSDNYTSLHRNFPCINSTSEEHNFKNQNTTEVLLNMIRDRSYPSKFAAFLRAQSLNEEVGISLKLTRVNGCGSKFSCAQLFQKELTPSDVGKLNRLVIPKKYAVKYFPCISDNQNMEELTFNNNNTNGGVNTEDIELAFYDRMVKLWKFRYCYWKSSQSFVFTRGWNRFVKEKKLKANDVIMFYTCEEGDKEDNHQKGNAFCLIDVIYSSSGNVQDQGKSFNDFSGHHQDHVNYQFNEMQMEEEHCQEKKVLKGLSACQSVGEKGFKLFGVHIK 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3672787 3673893 + Conep01aG0043800.1 Cone1ag0418 431109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0418 368 Gene3D - 170 296 IPR015300 -
Cone1ag0418 368 SUPERFAMILY DNA-binding pseudobarrel domain 174 283 IPR015300 -
Cone1ag0418 368 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0418 368 ProSiteProfiles AP2/ERF domain profile. 48 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0418 368 SUPERFAMILY DNA-binding domain 48 101 IPR016177 GO:0003677(InterPro)
Cone1ag0418 368 ProSiteProfiles B3 DNA-binding domain profile. 175 304 IPR003340 GO:0003677(InterPro)
Cone1ag0418 368 FunFam AP2 domain-containing protein RAP2.8 47 108 - -
Cone1ag0418 368 CDD B3_DNA 174 278 IPR003340 GO:0003677(InterPro)
Cone1ag0418 368 MobiDBLite consensus disorder prediction 23 45 - -
Cone1ag0418 368 MobiDBLite consensus disorder prediction 23 40 - -
Cone1ag0418 368 SMART B3_2 175 293 IPR003340 GO:0003677(InterPro)
Cone1ag0418 368 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 366 IPR044800 GO:0003700(InterPro)
Cone1ag0418 368 SMART rav1_2 48 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0418 368 CDD AP2 47 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0418 368 Pfam B3 DNA binding domain 175 282 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0853 Cone-Chr13:7632578 Cone1ag0418 Cone-Chr1:3672787 9.52E-48 dispersed
Cone1ag0418 Cone-Chr1:3672787 Cone9ag0480 Cone-Chr9:2293951 1.41E-55 dispersed
Cone1ag0418 Cone-Chr1:3672787 Cone5ag1280 Cone-Chr5:7047203 1.85E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45427 PF00071 Ras 1.50E-59 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0418 K09287 - mdm:103401573 330.487