Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0433 ATGTTGCGTGCAGTCTATTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGGGCTTACGATCTTGCGGCATTGAAGTACTGGGGAGCCTCCACGACTACAAACTTTCCTATAAGCAACTATGAGAAGGAACTGGAGGAAATGAAGCATATGACTAGACAAGAATTTGTGGCCTCCATTAGAAGGAAGAGCAGTGGGTTTTCTAGGGGAGCATCGATGTATCGTGGAGTTACAAGGCATCACCAACATGGACGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAATAAAGATCTTTACTTGGGTACTTTTAGTACCGAGGAAGAAGCAGCAGAGGCTTACGACATTGCCGCGATAAAGTTCAGAGGTCTAAATGCCGTGACAAACTTTGACATGAACCGATACGACGTAAAGAGCATATTAGAAAGCAGCACTCTTCCGATCGGAGGTGGGGCTGCAAAACGGCTAAAAGAAGCTCAAGTCATTGAATCGTCAAGAAAACGAGAGGAGAGTATAGCTTTAGGGTCAAGCTTTCAATATGGTGGTAGCTCAAGCTCTAGTAGGTCACAACAAGCTGCTGTTTATAACCCTAACTTGATTCACCAATCTTTTGACCAGTCCCAAATACCATTATTAACCCTACAACAGAACCAAGACATCTCTCACTACAATACCACTCATCAAGACCCATCTACATTTCATCAAAGTTATATCCAAACACAGCTTCAATTGCACCAGCAATCAGAAAATTCTTATAATTCTCAGTTTTATAACAACTACTTGCAGAATCACCCGGCTTTGCTTCAAGGTTTTGTGATGAATAACGTGGAGAATAGTGGCAATTCTAGTGGGAGTAGTGGTACTAACAATAATGGTGGGTATAATAATATTGGGCATGGACTTGCTTTAATGGGTCCAAATTCTGCTAGCACTAATGAGGTCAATGTGGGATCTTCTGATCATCAACAACAAGAACTTGCAGTTGTTAAGGTTGATTATGATATGCCTTCCGGCTCGACTTATGGTAGTTGGTCAGGCGAGCATTCTGTTCCGGGTTCAAATAGTGGGGTTTTCACAATGTGGAACGACTGA 1092 42.67 MLRAVYLGGYDKEEKAARAYDLAALKYWGASTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESSTLPIGGGAAKRLKEAQVIESSRKREESIALGSSFQYGGSSSSSRSQQAAVYNPNLIHQSFDQSQIPLLTLQQNQDISHYNTTHQDPSTFHQSYIQTQLQLHQQSENSYNSQFYNNYLQNHPALLQGFVMNNVENSGNSSGSSGTNNNGGYNNIGHGLALMGPNSASTNEVNVGSSDHQQQELAVVKVDYDMPSGSTYGSWSGEHSVPGSNSGVFTMWND 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3903900 3905628 - Conep01aG0045300.1 Cone1ag0433 431124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0433 363 ProSiteProfiles AP2/ERF domain profile. 1 37 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 237 - -
Cone1ag0433 363 SMART rav1_2 1 43 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 SMART rav1_2 73 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 CDD AP2 72 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 Pfam AP2 domain 74 123 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 Gene3D AP2/ERF domain 2 39 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 Gene3D AP2/ERF domain 73 133 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 CDD AP2 3 39 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 MobiDBLite consensus disorder prediction 278 299 - -
Cone1ag0433 363 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0433 363 FunFam AP2-like ethylene-responsive transcription factor 72 133 - -
Cone1ag0433 363 MobiDBLite consensus disorder prediction 278 296 - -
Cone1ag0433 363 SUPERFAMILY DNA-binding domain 5 39 IPR016177 GO:0003677(InterPro)
Cone1ag0433 363 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0433 Cone-Chr1:3903900 Cone4ag1633 Cone-Chr4:12351513 1.33E-74 dispersed
Cone1ag0433 Cone-Chr1:3903900 Cone5ag1468 Cone-Chr5:9723706 6.34E-237 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45429 PF00542 Ribosomal_L12 3.90E-23 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0433 K09285 - gmx:100788471 449.899