Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0433 | ATGTTGCGTGCAGTCTATTTAGGTGGGTATGACAAAGAAGAGAAAGCAGCCAGGGCTTACGATCTTGCGGCATTGAAGTACTGGGGAGCCTCCACGACTACAAACTTTCCTATAAGCAACTATGAGAAGGAACTGGAGGAAATGAAGCATATGACTAGACAAGAATTTGTGGCCTCCATTAGAAGGAAGAGCAGTGGGTTTTCTAGGGGAGCATCGATGTATCGTGGAGTTACAAGGCATCACCAACATGGACGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAATAAAGATCTTTACTTGGGTACTTTTAGTACCGAGGAAGAAGCAGCAGAGGCTTACGACATTGCCGCGATAAAGTTCAGAGGTCTAAATGCCGTGACAAACTTTGACATGAACCGATACGACGTAAAGAGCATATTAGAAAGCAGCACTCTTCCGATCGGAGGTGGGGCTGCAAAACGGCTAAAAGAAGCTCAAGTCATTGAATCGTCAAGAAAACGAGAGGAGAGTATAGCTTTAGGGTCAAGCTTTCAATATGGTGGTAGCTCAAGCTCTAGTAGGTCACAACAAGCTGCTGTTTATAACCCTAACTTGATTCACCAATCTTTTGACCAGTCCCAAATACCATTATTAACCCTACAACAGAACCAAGACATCTCTCACTACAATACCACTCATCAAGACCCATCTACATTTCATCAAAGTTATATCCAAACACAGCTTCAATTGCACCAGCAATCAGAAAATTCTTATAATTCTCAGTTTTATAACAACTACTTGCAGAATCACCCGGCTTTGCTTCAAGGTTTTGTGATGAATAACGTGGAGAATAGTGGCAATTCTAGTGGGAGTAGTGGTACTAACAATAATGGTGGGTATAATAATATTGGGCATGGACTTGCTTTAATGGGTCCAAATTCTGCTAGCACTAATGAGGTCAATGTGGGATCTTCTGATCATCAACAACAAGAACTTGCAGTTGTTAAGGTTGATTATGATATGCCTTCCGGCTCGACTTATGGTAGTTGGTCAGGCGAGCATTCTGTTCCGGGTTCAAATAGTGGGGTTTTCACAATGTGGAACGACTGA | 1092 | 42.67 | MLRAVYLGGYDKEEKAARAYDLAALKYWGASTTTNFPISNYEKELEEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMNRYDVKSILESSTLPIGGGAAKRLKEAQVIESSRKREESIALGSSFQYGGSSSSSRSQQAAVYNPNLIHQSFDQSQIPLLTLQQNQDISHYNTTHQDPSTFHQSYIQTQLQLHQQSENSYNSQFYNNYLQNHPALLQGFVMNNVENSGNSSGSSGTNNNGGYNNIGHGLALMGPNSASTNEVNVGSSDHQQQELAVVKVDYDMPSGSTYGSWSGEHSVPGSNSGVFTMWND | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3903900 | 3905628 | - | Conep01aG0045300.1 | Cone1ag0433 | 431124 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0433 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 37 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 3 | 237 | - | - | |
Cone1ag0433 | 363 | SMART | rav1_2 | 1 | 43 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | SMART | rav1_2 | 73 | 137 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | CDD | AP2 | 72 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | Pfam | AP2 domain | 74 | 123 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | Gene3D | AP2/ERF domain | 2 | 39 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | Gene3D | AP2/ERF domain | 73 | 133 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | CDD | AP2 | 3 | 39 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | MobiDBLite | consensus disorder prediction | 278 | 299 | - | - | |
Cone1ag0433 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 73 | 131 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0433 | 363 | FunFam | AP2-like ethylene-responsive transcription factor | 72 | 133 | - | - | |
Cone1ag0433 | 363 | MobiDBLite | consensus disorder prediction | 278 | 296 | - | - | |
Cone1ag0433 | 363 | SUPERFAMILY | DNA-binding domain | 5 | 39 | IPR016177 | GO:0003677(InterPro) | |
Cone1ag0433 | 363 | SUPERFAMILY | DNA-binding domain | 72 | 132 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0433 | Cone-Chr1:3903900 | Cone4ag1633 | Cone-Chr4:12351513 | 1.33E-74 | dispersed | |
Cone1ag0433 | Cone-Chr1:3903900 | Cone5ag1468 | Cone-Chr5:9723706 | 6.34E-237 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45429 | PF00542 | Ribosomal_L12 | 3.90E-23 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0433 | K09285 | - | gmx:100788471 | 449.899 |