Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0440 ATGGAGAACAATGTGGATGATCTTTTGGTGCCTCTAAATGGGCCCAAATTAATGAATGCATATAAGCCCAAGGAAACAATAGAAGACACTGGTTTTGCAAATAAAGATTATTCTGGACAAGAAATAGCAGTATGCCGACTCAGAATTGCAGGAATGACATGTACAACATGTGCCGAATCTGTTGAACGTGCCCTGTTAATGGTTGATGGAGTAAAAAAGGCAGTCGTAGGATTGGCTCTTGAGGAAGCAAAGGTCCACTTTGATCCAGACCTTATCACTGCAGACCAAATAGTTGAAGCAATTGAAGATGCTGGGTTTGGAGCTGAGCTTATAAACTCTGGGAATGATGTTAACAAAGTGCACTTAAAACTTGAAGGAATTAGCTCTCCGGGGGATTTGTCTACCATAAAATCTTCTCTGGAGTTAGCAGTTGGTGTAAATCATGTTGAAATGGACTTGGTGGGATATAACGTAACCATAAGCTATGACCCAGATATAACTGGTCCTAGGTCTCTTATAGAGTGCATTCAAGGAGCAAGCAAAAGCCCTGGCACATATTCTGCAAGCTTATATGTTCCTCCGAGACGAAGAGATATAAAACAGCTTCATGAAATTCACACTTATAGAAACCAGTTCTTGTTGAGCTGCCTCTTTTCAATTCCAGTATTTTTATTCGCCATGGTACTTCCTATGCTGCCTCCTTATGGCTATTGGTTAAACTATAGGATCCACAACATGCTCACTCTTGGGATGCTTCTTAGATGCATCTTCTCCACGCCAGTTCAGTTTATTATTGGCCGAAGGTTCTATATAGGATCATACCATGCTGTGAGGCGAAAATATGCTAATATGGATGTTCTCATTGCATTAGGCACTAATGCTGCTTACTTTTACTCTATATACGTTGTAATTAAGGCATTGACTTCAGATGCTTTTGAAGGGCAAGATTTCTTCGAAACTAGTTCTATGTTAATATCATTTATTCTCTTGGGGAAATTCTTGGAGGTCTTGGCTAAAGGGAAAACATCAGATGCCTTAGCGAAACTTGCTGATCTTGCTCCTGATACAGCTTGTCTGTTGACATTAGATGGTGATGGAAATGTTTTCAGGGAGATGGAGATTAATACTCAACTGATACAGAGGAATGACATACTCAAAATTGTCCCAGGGGAAAAAATTCCTGTGGACGGGATTGTTATAGATGGTCAAAGTCATGTTAACGAGAGTATGATCACTGGAGAGGCAAGGCCAGTGGCAAAAAGACCTAGCGACAAGGTTATTGGTGGGACTGTCAATGAAAATGGATGCTTACTGGTTAAGGCCAGTTATGTTGGGCCTGATACTGCACTATCCCAAATTGTTCAACTTGTGGAAGCTGCTCAGCTTGCTAGAGCACCTGTTCAGAGATTAGCTGATCAGATTTCAAAGTTTTTTGTTCCTGCTGTTGTTGTTACAGCATTTATTACATGGCTTGGATGGTTTATCCTTGGAGAAATTGGTATGTACCCTAAACATTGGATACCGAAAGCCATGGATGGATTTGAGCTTGCTCTTCAGTTTGGCATTTCAGTCCTGGTGGTTGCTTGCCCATGTGCTCTTGGTCTGGCAACACCAACAGCGGTCATGGTTGCCTCTGGGAAGGGTGCTTCACAAGGTGTGCTCATAAAGGGTGGAAATGCACTTGAAAAGGCACATAAGGTTAAAACTGTTGTTTTTGATAAGACTGGAACATTAACAGTTGGCAAACCAGTAGTAGTTGGTGTTGTGCTCTTTTCCGGTTTTTCAATGGAGGAATTCTGTGATGTGACTATAGCTACTGAGGCAAACAGTGAACACCCATTAGCAAAAGCTGCAGTAGAACATGCAAAGAAGCTGCGCAAGAAATTTGTGGTCCAGGCCGAACATTTACCAGAGGTTAAGGACTTTCAGGTGCACCCTGGAGCAGGGGTTGGTGCAAAAGTTGGAGACAGATTGGTTTTAGTTGGGAATAAAAGACTCATGTATGATTATAATATACCTGTCAGTCATGAAGTTGAAAGTTACATTTCAGAAAACGAGCATCTGGCTCGAACATGTGTTTTAGTTTCCATTGATGGAAGTGTTGCCGGATCCTTTGCTGTTACGGATCCAGTGAAGCCAGGAGCTGGGGTTGTCATATCCTTTCTACGTTCTATGGGCATCTCAAGCATCATGGTCACTGGTGACAATTGGGCTACAGCAACTGCTATTGCTAAGGAGGTAGGCATAGAAAAGGTCTTTGCTGAGACTGATCCACTTGGGAAAGCTGATAAGATAAAAGATTTACAGATGAAAGGTATAACAGTTGCTATGGTAGGGGATGGAATAAACGACTCTCCAGCCTTAGTAGCAGCTGATGTGGGCATGGCAATTGGTGCTGGAACAGATATAGCGATAGAAGCAGCTGATATAGTACTCATGAGAAGCAACTTGGAGGATGTGGTTACTGCAATAGATCTTTCTAGGAAGACAATGTCTCGAATCCGTCTCAATTACATCTGGGCTCTAGGGTATAACATTCTAGGTATGCCTATTGCTGCTGGAATCTTATACCCTTTTATGGGAATCAGATTGCCTCCTTGGCTTGCTGGTGCTTGTATGGCCGCTTCATCTGTAAGTGTGGTTTGTTCTTCTCTCTTGTTACAAACTTATAAGAAGCCTTTGCATATTCAATACTCTTAA 2700 41.96 MENNVDDLLVPLNGPKLMNAYKPKETIEDTGFANKDYSGQEIAVCRLRIAGMTCTTCAESVERALLMVDGVKKAVVGLALEEAKVHFDPDLITADQIVEAIEDAGFGAELINSGNDVNKVHLKLEGISSPGDLSTIKSSLELAVGVNHVEMDLVGYNVTISYDPDITGPRSLIECIQGASKSPGTYSASLYVPPRRRDIKQLHEIHTYRNQFLLSCLFSIPVFLFAMVLPMLPPYGYWLNYRIHNMLTLGMLLRCIFSTPVQFIIGRRFYIGSYHAVRRKYANMDVLIALGTNAAYFYSIYVVIKALTSDAFEGQDFFETSSMLISFILLGKFLEVLAKGKTSDALAKLADLAPDTACLLTLDGDGNVFREMEINTQLIQRNDILKIVPGEKIPVDGIVIDGQSHVNESMITGEARPVAKRPSDKVIGGTVNENGCLLVKASYVGPDTALSQIVQLVEAAQLARAPVQRLADQISKFFVPAVVVTAFITWLGWFILGEIGMYPKHWIPKAMDGFELALQFGISVLVVACPCALGLATPTAVMVASGKGASQGVLIKGGNALEKAHKVKTVVFDKTGTLTVGKPVVVGVVLFSGFSMEEFCDVTIATEANSEHPLAKAAVEHAKKLRKKFVVQAEHLPEVKDFQVHPGAGVGAKVGDRLVLVGNKRLMYDYNIPVSHEVESYISENEHLARTCVLVSIDGSVAGSFAVTDPVKPGAGVVISFLRSMGISSIMVTGDNWATATAIAKEVGIEKVFAETDPLGKADKIKDLQMKGITVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMRSNLEDVVTAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGILYPFMGIRLPPWLAGACMAASSVSVVCSSLLLQTYKKPLHIQYS 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3956128 3961115 + Conep01aG0046000.1 Cone1ag0440 431131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0440 899 SUPERFAMILY Calcium ATPase, transduction domain A 371 457 IPR008250 -
Cone1ag0440 899 SUPERFAMILY Calcium ATPase, transmembrane domain M 316 564 IPR023298 -
Cone1ag0440 899 FunFam Copper-transporting ATPase HMA5 42 113 - -
Cone1ag0440 899 CDD P-type_ATPase_Cu-like 212 874 - -
Cone1ag0440 899 SFLD Haloacid Dehalogenase 553 830 - -
Cone1ag0440 899 Gene3D - 44 114 - -
Cone1ag0440 899 FunFam Probable copper-transporting ATPase HMA5 696 835 - -
Cone1ag0440 899 Gene3D - 117 191 - -
Cone1ag0440 899 Pfam Heavy-metal-associated domain 47 106 IPR006121 GO:0046872(InterPro)
Cone1ag0440 899 NCBIfam HAD-IC family P-type ATPase 324 855 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone1ag0440 899 ProSitePatterns E1-E2 ATPases phosphorylation site. 573 579 IPR018303 -
Cone1ag0440 899 SFLD p-type atpase 553 830 IPR044492 -
Cone1ag0440 899 FunFam Copper-transporting ATPase 1, putative 339 461 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 44 69 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 267 292 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 70 93 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 247 267 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 212 233 - -
Cone1ag0440 899 PRINTS Copper-transporting ATPase 1 signature 99 119 - -
Cone1ag0440 899 SUPERFAMILY HMA, heavy metal-associated domain 40 114 IPR036163 GO:0046872(InterPro)
Cone1ag0440 899 Pfam E1-E2 ATPase 370 550 - -
Cone1ag0440 899 ProSiteProfiles Heavy-metal-associated domain profile. 118 184 IPR006121 GO:0046872(InterPro)
Cone1ag0440 899 NCBIfam heavy metal translocating P-type ATPase 284 887 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Cone1ag0440 899 Gene3D - 582 711 IPR023299 GO:0000166(InterPro)
Cone1ag0440 899 ProSitePatterns Heavy-metal-associated domain. 49 78 IPR017969 GO:0046872(InterPro)
Cone1ag0440 899 SUPERFAMILY HMA, heavy metal-associated domain 114 181 IPR036163 GO:0046872(InterPro)
Cone1ag0440 899 SUPERFAMILY HAD-like 569 884 IPR036412 -
Cone1ag0440 899 Gene3D - 562 828 IPR023214 -
Cone1ag0440 899 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 15 895 - -
Cone1ag0440 899 Gene3D - 339 461 - -
Cone1ag0440 899 CDD HMA 47 109 IPR006121 GO:0046872(InterPro)
Cone1ag0440 899 Pfam haloacid dehalogenase-like hydrolase 567 792 - -
Cone1ag0440 899 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872(InterPro)
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 801 813 - -
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 703 714 - -
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 571 585 - -
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 778 797 - -
Cone1ag0440 899 PRINTS P-type cation-transporting ATPase superfamily signature 407 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0440 Cone-Chr1:3956128 Cone6ag0759 Cone-Chr6:3867984 0 dispersed
Cone1ag0440 Cone-Chr1:3956128 Cone9ag0775 Cone-Chr9:3710036 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0440 K17686 - rcu:8274424 1354.35