Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag0493 | ATGCTCTCACTGAGTTCATGTTCTTGTCTACTCCGCCTCTCTCCACTCTCTCTGCGCCGCCGCCACAACCGCTGCCAGCTCACCAGAGCTATCTCTTTCTCTCTCCTCCCCACCAAACCTCTCTCTCTCAACCCACTCATCTTCCTCTCATCCTCGAGCCCTAATTTCGCAGAAATGTCTTCTCGCCCTTCAGCTTTCGACGCTCTTATGTCCGGCGCTCGCGCCACCGCCGCAGCAAAAAAGAAGTCCTCTCAATCGTCTTCCTCTCCCAAGAAACGTAAAACCGTAGAATCATCTACCCCGACCCTAATTTCGACTTCTTCTTCCAAAGATTCCGATTCTACCTCCAAAATCGAATCCCAAAGCAATATCGAAACTCAGAACGATCTCAGTTGTCATGACAATAGTGATGCTATTTCTAAAACTGAGGAAGCGCCAGCAGTGAAGAAACGATGTGCCGTTACTAATCAGGAGAACACTGCGAAATTGAAGAGTAACATTTTGGAATTGAAGAAAAGGGCAAATGATTTCAAGCCGAAATCAGTTGCATGTTGGAAACAAGGCGAACGGGTTCCATTTCTATTTATTTGCTTAGCTTTTGATTTGATTTCAGAGGAGTCCAGCCGAATTGTGATCACTGATATAGTGTGTAATACGTTGAGGACATTAATGAGTACTACACCTGATGATTTAATTGCCGCTGTTTATATATTGGCTAATAAGATAGCTCCCTCGCATGAAGGGTTGGAGCTAGGGATTGGGGATGCTTCGATTATGAAAGCTCTTGCTGAGGCGTTTGGAAGAACTGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGTGATTTGGGTCTCGTTGCAAAAGCCAGCCGTTCATCTCAATCTATGATGCGTAAACCTGATGCATTAACCATCGCCAAAGTCTTTGATACATTTCGGATAATTGCCAAGGAATCTGGTAAGGATAGTCAAGAGAAAAAGAAGAACCATATCAAGTCACTTCTCGTTGCTGCCACTGACTGTGAACCTCTCTATCTCATTCGACTACTACAGACAAAGTTGCGAATTGGATTGGCTGAGCAGACTCTTTTAGCTGCACTGGGGCAAGCTGCTGTATATGCAGAAAAGCACTCTACCCCACCTCCTCATATTCAATCTCCTTTAGAGGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTGTACTTCCGGTTTATGATAAAATAGTCCATGCACTTCTCACTGGTGGTGTATGGAGTCTCCCGACAGCATGTAGCTTTACACCTGGTGTTCCAGTTGGACCTATGCTAGCCAAACCAACCAAGGGGGTGTCTGAGATCCTAAACAAATTCCAGGATACAGAATTTACCTGTGAATACAAGTATGATGGCGAGCGTGCCCAGATACATTATATGGAGGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAATACTGGAAAGTTTCCTGATGTTCTCATTGCAGCATCAAGGTTAAAGAAACCGACTGTAACTTCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGTAAGACAGAAGATTCTGCCTTTCCAGGTCCTGAGTACTCGAGCTCGCAAGAATGTGGTTGTGAGTGACATCAAGGTTGAAGTGTGCATATTCGCTTTTGATTTATTATATCTCAATGGGCAGGCACTTATTCAGGAACAACTGAAACTTCGTAGAGAGCGCCTTTACGACTCTTTTGTGGAAGAACCTGGATATTTTCAGTTTGCAACAGCAATAATAACAAATGATCTTGAAGAGATACAGAAGTTTCTTGACACTTCTGTTGATCAGAGCTGTGAGGGTTTGATTATCAAGACATTGGATAGAGATGCTACCTACGAGCCATCCAAGCGGTCGCTTAACTGGTTAAAGTTGAAAAAGGATTACATCGATAATATAGGGGACTCACTAGATCTGGTACCAATTGGTGCTTTTCATGGCCGTGGGAAACGGACAGGTGTCTATGGAGCATTTCTCCTGGCATGTTATGACAATGACAATGAAGAATTTCAGAGCATTTGCAAGATAGGGACTGGGTTCTCGGAAGCAATGCTCGAAGAACGTTCTGCTAGTCTCCGCTCTAAAGTGATTCCAGAACCGAAGCCATACTTTCGGTATGGAGCAATTAATCCAGATGTATGGTTTGAACCCATTGAGGTTTGGGAGGTTAAAGCTGCAGACTTAACCATTAGCCCTGTTCACAGAGCGGGAGTAGGCATAGTGGATAACGACAAGGGCATTTCTCTTCGCTTTCCACGTCTTGTTCGGGTAAGAGAAGACAAGACTCCTGAGCAAGCCTCATCATCTGAGCAGGTTGCGGAGATGTATAATGCTCAAAAGCACAATCATCAAAACAATCAAGATGACAATGAAGATGATTGA | 2418 | 43.76 | MLSLSSCSCLLRLSPLSLRRRHNRCQLTRAISFSLLPTKPLSLNPLIFLSSSSPNFAEMSSRPSAFDALMSGARATAAAKKKSSQSSSSPKKRKTVESSTPTLISTSSSKDSDSTSKIESQSNIETQNDLSCHDNSDAISKTEEAPAVKKRCAVTNQENTAKLKSNILELKKRANDFKPKSVACWKQGERVPFLFICLAFDLISEESSRIVITDIVCNTLRTLMSTTPDDLIAAVYILANKIAPSHEGLELGIGDASIMKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRIIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVHALLTGGVWSLPTACSFTPGVPVGPMLAKPTKGVSEILNKFQDTEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVLIAASRLKKPTVTSFILDCELVAYDRVRQKILPFQVLSTRARKNVVVSDIKVEVCIFAFDLLYLNGQALIQEQLKLRRERLYDSFVEEPGYFQFATAIITNDLEEIQKFLDTSVDQSCEGLIIKTLDRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKPYFRYGAINPDVWFEPIEVWEVKAADLTISPVHRAGVGIVDNDKGISLRFPRLVRVREDKTPEQASSSEQVAEMYNAQKHNHQNNQDDNEDD | 805 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 4814028 | 4819567 | - | Conep01aG0051500.1 | Cone1ag0493 | 431184 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag0493 | 805 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 612 | 638 | IPR016059 | GO:0003909(InterPro) | |
| Cone1ag0493 | 805 | Gene3D | DNA ligase/mRNA capping enzyme | 463 | 588 | - | - | |
| Cone1ag0493 | 805 | FunFam | DNA ligase | 643 | 801 | - | - | |
| Cone1ag0493 | 805 | NCBIfam | ATP-dependent DNA ligase | 250 | 788 | IPR000977 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro) | |
| Cone1ag0493 | 805 | Pfam | ATP dependent DNA ligase C terminal region | 663 | 773 | IPR012309 | GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | MobiDBLite | consensus disorder prediction | 771 | 805 | - | - | |
| Cone1ag0493 | 805 | MobiDBLite | consensus disorder prediction | 78 | 136 | - | - | |
| Cone1ag0493 | 805 | CDD | Adenylation_DNA_ligase_I_Euk | 423 | 641 | - | - | |
| Cone1ag0493 | 805 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 540 | 676 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | FunFam | DNA ligase | 169 | 436 | - | - | |
| Cone1ag0493 | 805 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 458 | 466 | IPR016059 | GO:0003909(InterPro) | |
| Cone1ag0493 | 805 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 81 | 802 | IPR050191 | GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER) | |
| Cone1ag0493 | 805 | Gene3D | - | 444 | 642 | - | - | |
| Cone1ag0493 | 805 | Pfam | ATP dependent DNA ligase domain | 434 | 638 | IPR012310 | GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | MobiDBLite | consensus disorder prediction | 778 | 795 | - | - | |
| Cone1ag0493 | 805 | Pfam | DNA ligase N terminus | 192 | 367 | IPR012308 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 174 | 424 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | FunFam | DNA ligase | 434 | 640 | - | - | |
| Cone1ag0493 | 805 | SUPERFAMILY | Nucleic acid-binding proteins | 646 | 791 | IPR012340 | - | |
| Cone1ag0493 | 805 | Gene3D | - | 643 | 804 | IPR012340 | - | |
| Cone1ag0493 | 805 | MobiDBLite | consensus disorder prediction | 78 | 135 | - | - | |
| Cone1ag0493 | 805 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 426 | 644 | - | - | |
| Cone1ag0493 | 805 | Gene3D | - | 169 | 436 | IPR036599 | GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Cone1ag0493 | 805 | CDD | OBF_DNA_ligase_I | 646 | 790 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag0299 | Cone-Chr11:1458296 | Cone1ag0493 | Cone-Chr1:4814028 | 6.16E-157 | transposed | |
| Cone19ag1014 | Cone-Chr19:7567874 | Cone1ag0493 | Cone-Chr1:4814028 | 0 | transposed | |
| Cone6ag0127 | Cone-Chr6:620319 | Cone1ag0493 | Cone-Chr1:4814028 | 1.06E-207 | transposed | |
| Cone1ag0493 | Cone-Chr1:4814028 | Cone5ag1259 | Cone-Chr5:6001243 | 8.97E-39 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag0493 | K10747 | - | csv:101213447 | 1159.44 |