Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0493 ATGCTCTCACTGAGTTCATGTTCTTGTCTACTCCGCCTCTCTCCACTCTCTCTGCGCCGCCGCCACAACCGCTGCCAGCTCACCAGAGCTATCTCTTTCTCTCTCCTCCCCACCAAACCTCTCTCTCTCAACCCACTCATCTTCCTCTCATCCTCGAGCCCTAATTTCGCAGAAATGTCTTCTCGCCCTTCAGCTTTCGACGCTCTTATGTCCGGCGCTCGCGCCACCGCCGCAGCAAAAAAGAAGTCCTCTCAATCGTCTTCCTCTCCCAAGAAACGTAAAACCGTAGAATCATCTACCCCGACCCTAATTTCGACTTCTTCTTCCAAAGATTCCGATTCTACCTCCAAAATCGAATCCCAAAGCAATATCGAAACTCAGAACGATCTCAGTTGTCATGACAATAGTGATGCTATTTCTAAAACTGAGGAAGCGCCAGCAGTGAAGAAACGATGTGCCGTTACTAATCAGGAGAACACTGCGAAATTGAAGAGTAACATTTTGGAATTGAAGAAAAGGGCAAATGATTTCAAGCCGAAATCAGTTGCATGTTGGAAACAAGGCGAACGGGTTCCATTTCTATTTATTTGCTTAGCTTTTGATTTGATTTCAGAGGAGTCCAGCCGAATTGTGATCACTGATATAGTGTGTAATACGTTGAGGACATTAATGAGTACTACACCTGATGATTTAATTGCCGCTGTTTATATATTGGCTAATAAGATAGCTCCCTCGCATGAAGGGTTGGAGCTAGGGATTGGGGATGCTTCGATTATGAAAGCTCTTGCTGAGGCGTTTGGAAGAACTGAAGTTCAGGTTAAAAAGCAATACAAGGAATTGGGTGATTTGGGTCTCGTTGCAAAAGCCAGCCGTTCATCTCAATCTATGATGCGTAAACCTGATGCATTAACCATCGCCAAAGTCTTTGATACATTTCGGATAATTGCCAAGGAATCTGGTAAGGATAGTCAAGAGAAAAAGAAGAACCATATCAAGTCACTTCTCGTTGCTGCCACTGACTGTGAACCTCTCTATCTCATTCGACTACTACAGACAAAGTTGCGAATTGGATTGGCTGAGCAGACTCTTTTAGCTGCACTGGGGCAAGCTGCTGTATATGCAGAAAAGCACTCTACCCCACCTCCTCATATTCAATCTCCTTTAGAGGAGGCTGCAAAGATTGTTAAACAAGTGTACTCTGTACTTCCGGTTTATGATAAAATAGTCCATGCACTTCTCACTGGTGGTGTATGGAGTCTCCCGACAGCATGTAGCTTTACACCTGGTGTTCCAGTTGGACCTATGCTAGCCAAACCAACCAAGGGGGTGTCTGAGATCCTAAACAAATTCCAGGATACAGAATTTACCTGTGAATACAAGTATGATGGCGAGCGTGCCCAGATACATTATATGGAGGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGAAATACTGGAAAGTTTCCTGATGTTCTCATTGCAGCATCAAGGTTAAAGAAACCGACTGTAACTTCATTTATTTTGGATTGTGAACTTGTTGCTTATGATCGTGTAAGACAGAAGATTCTGCCTTTCCAGGTCCTGAGTACTCGAGCTCGCAAGAATGTGGTTGTGAGTGACATCAAGGTTGAAGTGTGCATATTCGCTTTTGATTTATTATATCTCAATGGGCAGGCACTTATTCAGGAACAACTGAAACTTCGTAGAGAGCGCCTTTACGACTCTTTTGTGGAAGAACCTGGATATTTTCAGTTTGCAACAGCAATAATAACAAATGATCTTGAAGAGATACAGAAGTTTCTTGACACTTCTGTTGATCAGAGCTGTGAGGGTTTGATTATCAAGACATTGGATAGAGATGCTACCTACGAGCCATCCAAGCGGTCGCTTAACTGGTTAAAGTTGAAAAAGGATTACATCGATAATATAGGGGACTCACTAGATCTGGTACCAATTGGTGCTTTTCATGGCCGTGGGAAACGGACAGGTGTCTATGGAGCATTTCTCCTGGCATGTTATGACAATGACAATGAAGAATTTCAGAGCATTTGCAAGATAGGGACTGGGTTCTCGGAAGCAATGCTCGAAGAACGTTCTGCTAGTCTCCGCTCTAAAGTGATTCCAGAACCGAAGCCATACTTTCGGTATGGAGCAATTAATCCAGATGTATGGTTTGAACCCATTGAGGTTTGGGAGGTTAAAGCTGCAGACTTAACCATTAGCCCTGTTCACAGAGCGGGAGTAGGCATAGTGGATAACGACAAGGGCATTTCTCTTCGCTTTCCACGTCTTGTTCGGGTAAGAGAAGACAAGACTCCTGAGCAAGCCTCATCATCTGAGCAGGTTGCGGAGATGTATAATGCTCAAAAGCACAATCATCAAAACAATCAAGATGACAATGAAGATGATTGA 2418 43.76 MLSLSSCSCLLRLSPLSLRRRHNRCQLTRAISFSLLPTKPLSLNPLIFLSSSSPNFAEMSSRPSAFDALMSGARATAAAKKKSSQSSSSPKKRKTVESSTPTLISTSSSKDSDSTSKIESQSNIETQNDLSCHDNSDAISKTEEAPAVKKRCAVTNQENTAKLKSNILELKKRANDFKPKSVACWKQGERVPFLFICLAFDLISEESSRIVITDIVCNTLRTLMSTTPDDLIAAVYILANKIAPSHEGLELGIGDASIMKALAEAFGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRIIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPHIQSPLEEAAKIVKQVYSVLPVYDKIVHALLTGGVWSLPTACSFTPGVPVGPMLAKPTKGVSEILNKFQDTEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVLIAASRLKKPTVTSFILDCELVAYDRVRQKILPFQVLSTRARKNVVVSDIKVEVCIFAFDLLYLNGQALIQEQLKLRRERLYDSFVEEPGYFQFATAIITNDLEEIQKFLDTSVDQSCEGLIIKTLDRDATYEPSKRSLNWLKLKKDYIDNIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPEPKPYFRYGAINPDVWFEPIEVWEVKAADLTISPVHRAGVGIVDNDKGISLRFPRLVRVREDKTPEQASSSEQVAEMYNAQKHNHQNNQDDNEDD 805
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4814028 4819567 - Conep01aG0051500.1 Cone1ag0493 431184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0493 805 ProSitePatterns ATP-dependent DNA ligase signature 2. 612 638 IPR016059 GO:0003909(InterPro)
Cone1ag0493 805 Gene3D DNA ligase/mRNA capping enzyme 463 588 - -
Cone1ag0493 805 FunFam DNA ligase 643 801 - -
Cone1ag0493 805 NCBIfam ATP-dependent DNA ligase 250 788 IPR000977 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0071897(InterPro)
Cone1ag0493 805 Pfam ATP dependent DNA ligase C terminal region 663 773 IPR012309 GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 MobiDBLite consensus disorder prediction 771 805 - -
Cone1ag0493 805 MobiDBLite consensus disorder prediction 78 136 - -
Cone1ag0493 805 CDD Adenylation_DNA_ligase_I_Euk 423 641 - -
Cone1ag0493 805 ProSiteProfiles ATP-dependent DNA ligase family profile. 540 676 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 FunFam DNA ligase 169 436 - -
Cone1ag0493 805 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 458 466 IPR016059 GO:0003909(InterPro)
Cone1ag0493 805 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 81 802 IPR050191 GO:0003910(PANTHER)|GO:0005634(PANTHER)|GO:0005739(PANTHER)|GO:0006266(PANTHER)|GO:0006273(PANTHER)
Cone1ag0493 805 Gene3D - 444 642 - -
Cone1ag0493 805 Pfam ATP dependent DNA ligase domain 434 638 IPR012310 GO:0003910(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 MobiDBLite consensus disorder prediction 778 795 - -
Cone1ag0493 805 Pfam DNA ligase N terminus 192 367 IPR012308 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 174 424 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 FunFam DNA ligase 434 640 - -
Cone1ag0493 805 SUPERFAMILY Nucleic acid-binding proteins 646 791 IPR012340 -
Cone1ag0493 805 Gene3D - 643 804 IPR012340 -
Cone1ag0493 805 MobiDBLite consensus disorder prediction 78 135 - -
Cone1ag0493 805 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 426 644 - -
Cone1ag0493 805 Gene3D - 169 436 IPR036599 GO:0003677(InterPro)|GO:0003910(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Cone1ag0493 805 CDD OBF_DNA_ligase_I 646 790 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0299 Cone-Chr11:1458296 Cone1ag0493 Cone-Chr1:4814028 6.16E-157 transposed
Cone19ag1014 Cone-Chr19:7567874 Cone1ag0493 Cone-Chr1:4814028 0 transposed
Cone6ag0127 Cone-Chr6:620319 Cone1ag0493 Cone-Chr1:4814028 1.06E-207 transposed
Cone1ag0493 Cone-Chr1:4814028 Cone5ag1259 Cone-Chr5:6001243 8.97E-39 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0493 K10747 - csv:101213447 1159.44