Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0495 ATGTGGATACAGGCAATCTTGCTTGGTGCACATGATACATACTCTCAAGATGCTTCAATGCAAGTAACACTAGCATTCAACCATTTCGGACAAGGCTTGGCTGCAAGAATGCCGAGATGTAGACTGGGTTTCTTCCATGTGGTGAACAATGACTACACACATTGGCTCATCTATGCGATCGGAGGTAGCGCAAATGTGACTATTATAAGCCGAGGCAATCGATTCATTGCACCACCTGACGACAATGCAAAGGAGGTAACTCGTAGGATGAGTGCGCCTGAGAGCGAGTGGAAGAGTTGGACATGGGTGTCCGAAGGAGATTTGATGATGAATGGAGCATTCTTTGTTGAATCAGGAAATTCAAAAGAGGAAGACCGATTTAGGAGGCTTGCTGTGATCAATAATAGGCCCGGGAGTTACGTCACGAGGCTTACACGCTGCGCTGGTGCACTATCCTGCTTTGTTGGTAAACCGTGTTAG 480 46.88 MWIQAILLGAHDTYSQDASMQVTLAFNHFGQGLAARMPRCRLGFFHVVNNDYTHWLIYAIGGSANVTIISRGNRFIAPPDDNAKEVTRRMSAPESEWKSWTWVSEGDLMMNGAFFVESGNSKEEDRFRRLAVINNRPGSYVTRLTRCAGALSCFVGKPC 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4834236 4834715 + Conep01aG0051700.1 Cone1ag0495 431186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0495 159 Pfam Pectate lyase 6 75 IPR002022 -
Cone1ag0495 159 Gene3D - 4 152 IPR012334 -
Cone1ag0495 159 PRINTS Pollen allergen Amb family signature 130 153 IPR018082 -
Cone1ag0495 159 PRINTS Pollen allergen Amb family signature 100 124 IPR018082 -
Cone1ag0495 159 PRINTS Pollen allergen Amb family signature 58 77 IPR018082 -
Cone1ag0495 159 PRINTS Pollen allergen Amb family signature 36 55 IPR018082 -
Cone1ag0495 159 PANTHER PECTATE LYASE 18-RELATED 5 156 IPR045032 GO:0030570(InterPro)
Cone1ag0495 159 SUPERFAMILY Pectin lyase-like 6 159 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0495 Cone-Chr1:4834236 Cone8ag0710 Cone-Chr8:7123264 3.02E-58 dispersed
Cone1ag0495 Cone-Chr1:4834236 Cone1ag1378 Cone-Chr1:56664382 3.93E-49 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone10ag0217 Cone-Chr10:1059074 5.54E-50 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone18ag0538 Cone-Chr18:2654646 7.76E-50 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone5ag1260 Cone-Chr5:6004920 2.61E-45 wgd
Cone1ag0495 Cone-Chr1:4834236 Cone5ag0370 Cone-Chr5:1575229 2.38E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0495 K01728 - csv:101206497 230.335