Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0497 ATGTTCGATATGGAACCGATTCAAAACCCTCTAATGCAAATTAACGATTTCGATCCACGAGATTTCACAGCCGATACAACCCATTTCGACCACCAATTCGTCGACCTATTCCGGGGATCCGAACATGAAAACCCAATGCTCAATTTCGATCTCGAACTCATCACTGGCAGCTTCGTCGATTACCCGCCATTTTCTCACAACCCAGATCCGTACATGTTCAACTTCAACCCAATCAGAGAGCCGGATCAGAACTCCATGTTCAAGACGCTTGCGAGCTTTGATGGGGAAGAAATGAAAGCGGCGTTGGATATGGAAGATGACGATGGAGAAGAAGGCTCTTCTGGAACGACCATGACTACTTCCACGACGAGGAGACGGAAAGGTGAGAGGTCAAGGACTTTGATTTCTGAGAGAAGGAGGAGAGGGAGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCTAATATTACAAAGATGGATAAAGCTTCGATTGTTGGAGATGCTGTATCGTACGTGCAACATCTTCAATCACAGGCCAAGCAGCTTCAAGTTGAGATTGCAGGTCTTGAAGCCTCCGTTAATGGAGCTGAGAAGTATCAAGGCTCTACTAAAAAGCCCAACAAGATTCAAATTCCACGCCCAAACCGATTAATCCCCAAGAAAATCATTCAGATGGATATCTTTCAGGTAGAAGAAAGAGGGTTCTACATGAGGCTGGTTTGCCATAAAGGAGAAGAAGTGGCCATGTCCCTTTACAGAGTTCTTGAATCTCTGGCAAGCTTCGATGTCCAGAGCTCCAATTTGGCTACTGTTTCTGATAAATTTGTCCTCACAGCTACTCTCAACGTAAAAGACTGTACGCAAAACATGAACTTGCAAAATTTGAAGCTGTGGGTCACAGGGGCTCTCCTCAACCATGGCTTTGAATTCAATTCCCCTTTTGCTGCTGCTGCCTAG 963 45.28 MFDMEPIQNPLMQINDFDPRDFTADTTHFDHQFVDLFRGSEHENPMLNFDLELITGSFVDYPPFSHNPDPYMFNFNPIREPDQNSMFKTLASFDGEEMKAALDMEDDDGEEGSSGTTMTTSTTRRRKGERSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVSYVQHLQSQAKQLQVEIAGLEASVNGAEKYQGSTKKPNKIQIPRPNRLIPKKIIQMDIFQVEERGFYMRLVCHKGEEVAMSLYRVLESLASFDVQSSNLATVSDKFVLTATLNVKDCTQNMNLQNLKLWVTGALLNHGFEFNSPFAAAA 320
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4842772 4844595 + Conep01aG0051900.1 Cone1ag0497 431188
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0497 320 SMART finulus 134 183 IPR011598 GO:0046983(InterPro)
Cone1ag0497 320 Coils Coil 174 201 - -
Cone1ag0497 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 193 IPR036638 GO:0046983(InterPro)
Cone1ag0497 320 MobiDBLite consensus disorder prediction 105 139 - -
Cone1ag0497 320 Gene3D - 119 194 IPR036638 GO:0046983(InterPro)
Cone1ag0497 320 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 124 194 - -
Cone1ag0497 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983(InterPro)
Cone1ag0497 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 102 310 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone1ag0497 320 Pfam Helix-loop-helix DNA-binding domain 132 178 IPR011598 GO:0046983(InterPro)
Cone1ag0497 320 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0497 Cone-Chr1:4842772 Cone8ag0471 Cone-Chr8:3119283 1.02E-13 dispersed
Cone1ag0497 Cone-Chr1:4842772 Cone5ag1262 Cone-Chr5:6012846 3.13E-180 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45435 PF00141 peroxidase 1.50E-67 CL0617 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0497 K26214 - rcu:8275242 300.441