Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0497 | ATGTTCGATATGGAACCGATTCAAAACCCTCTAATGCAAATTAACGATTTCGATCCACGAGATTTCACAGCCGATACAACCCATTTCGACCACCAATTCGTCGACCTATTCCGGGGATCCGAACATGAAAACCCAATGCTCAATTTCGATCTCGAACTCATCACTGGCAGCTTCGTCGATTACCCGCCATTTTCTCACAACCCAGATCCGTACATGTTCAACTTCAACCCAATCAGAGAGCCGGATCAGAACTCCATGTTCAAGACGCTTGCGAGCTTTGATGGGGAAGAAATGAAAGCGGCGTTGGATATGGAAGATGACGATGGAGAAGAAGGCTCTTCTGGAACGACCATGACTACTTCCACGACGAGGAGACGGAAAGGTGAGAGGTCAAGGACTTTGATTTCTGAGAGAAGGAGGAGAGGGAGAATGAAGGAGAAGCTTTACGCATTGCGTTCTTTGGTTCCTAATATTACAAAGATGGATAAAGCTTCGATTGTTGGAGATGCTGTATCGTACGTGCAACATCTTCAATCACAGGCCAAGCAGCTTCAAGTTGAGATTGCAGGTCTTGAAGCCTCCGTTAATGGAGCTGAGAAGTATCAAGGCTCTACTAAAAAGCCCAACAAGATTCAAATTCCACGCCCAAACCGATTAATCCCCAAGAAAATCATTCAGATGGATATCTTTCAGGTAGAAGAAAGAGGGTTCTACATGAGGCTGGTTTGCCATAAAGGAGAAGAAGTGGCCATGTCCCTTTACAGAGTTCTTGAATCTCTGGCAAGCTTCGATGTCCAGAGCTCCAATTTGGCTACTGTTTCTGATAAATTTGTCCTCACAGCTACTCTCAACGTAAAAGACTGTACGCAAAACATGAACTTGCAAAATTTGAAGCTGTGGGTCACAGGGGCTCTCCTCAACCATGGCTTTGAATTCAATTCCCCTTTTGCTGCTGCTGCCTAG | 963 | 45.28 | MFDMEPIQNPLMQINDFDPRDFTADTTHFDHQFVDLFRGSEHENPMLNFDLELITGSFVDYPPFSHNPDPYMFNFNPIREPDQNSMFKTLASFDGEEMKAALDMEDDDGEEGSSGTTMTTSTTRRRKGERSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVSYVQHLQSQAKQLQVEIAGLEASVNGAEKYQGSTKKPNKIQIPRPNRLIPKKIIQMDIFQVEERGFYMRLVCHKGEEVAMSLYRVLESLASFDVQSSNLATVSDKFVLTATLNVKDCTQNMNLQNLKLWVTGALLNHGFEFNSPFAAAA | 320 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4842772 | 4844595 | + | Conep01aG0051900.1 | Cone1ag0497 | 431188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0497 | 320 | SMART | finulus | 134 | 183 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0497 | 320 | Coils | Coil | 174 | 201 | - | - | |
Cone1ag0497 | 320 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 126 | 193 | IPR036638 | GO:0046983(InterPro) | |
Cone1ag0497 | 320 | MobiDBLite | consensus disorder prediction | 105 | 139 | - | - | |
Cone1ag0497 | 320 | Gene3D | - | 119 | 194 | IPR036638 | GO:0046983(InterPro) | |
Cone1ag0497 | 320 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 124 | 194 | - | - | |
Cone1ag0497 | 320 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 128 | 177 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0497 | 320 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 102 | 310 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Cone1ag0497 | 320 | Pfam | Helix-loop-helix DNA-binding domain | 132 | 178 | IPR011598 | GO:0046983(InterPro) | |
Cone1ag0497 | 320 | MobiDBLite | consensus disorder prediction | 123 | 139 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0497 | Cone-Chr1:4842772 | Cone8ag0471 | Cone-Chr8:3119283 | 1.02E-13 | dispersed | |
Cone1ag0497 | Cone-Chr1:4842772 | Cone5ag1262 | Cone-Chr5:6012846 | 3.13E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45435 | PF00141 | peroxidase | 1.50E-67 | CL0617 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0497 | K26214 | - | rcu:8275242 | 300.441 |