Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0502 ATGGGTCAGATCCAGTACTCCGAGAAGTATTTCGATGACACTTATGAGTATAGGCACGTCGTACTTCCTCCCGAAGTAGCAAAGCTTCTTCCCAAGAATCGCCTCCTCTCTGAAAATGAATGGCGGGCCATCGGAGTCCAGCAGAGTCGTGGGTGGGTCCACTATGCGATTCACCGTCCAGAGCCACACATAATGCTGTTCAGGAGACCTCTGAATTACCAGCAGCAGCAAGAGACCCAACAACAACAACAAGCTCAGCAACAAAACGTCCTTGCTAAGTGA 282 50.0 MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQETQQQQQAQQQNVLAK 93
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4879589 4881547 - Conep01aG0052400.1 Cone1ag0502 431193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0502 93 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538(InterPro)
Cone1ag0502 93 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
Cone1ag0502 93 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 90 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Cone1ag0502 93 FunFam Cyclin-dependent kinases regulatory subunit 1 87 - -
Cone1ag0502 93 Gene3D - 1 86 IPR036858 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0502 Cone-Chr1:4879589 Cone11ag1331 Cone-Chr11:9780307 5.59E-54 wgd
Cone1ag0502 Cone-Chr1:4879589 Cone18ag0244 Cone-Chr18:1200438 5.59E-54 wgd
Cone1ag0502 Cone-Chr1:4879589 Cone5ag1270 Cone-Chr5:6065625 5.63E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0502 K02219 - gmx:547737 159.073