Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0527 ATGGAGCCATGGCTGGACGACTTAGCCGACGATCTTCAGAGCCTAAGTTTCACCTCTACAAACACCAACCGTAGCATCAGCTCCTGCTCTGATTCAACTCTAACGGCTTCATTCTCCTCTCGGCTCGGCTCACTCCCCAACAAACCTCATGCGCCGTCGTCAGACCCCTGCTGGTCTGCCATTAATCTGATCAAATCCGAATCCGATTCTTCGACGCGTCAACTCTCACTCTCCGACCTCAAATTCCTTCTCCGGTTGGGCTCCGGCGACATTGGCTCGGTCTACCTCGCGGAGTTGAAGTCCGCCGGAGTAGTAACCGACTCAGCCGAGAGATGCGTTTTCGCGGCGAAGGTGATGGATAAGAAGGAGTTAGTTAGTCGGAGCAAAGAAGGTCGGGCGAGGACAGAGAAGGAAATACTGGAATTGTTGGATCATCCGTTCTTGCCGACGCTCTACGCGAGTATCGATGCGCCGAAGTGGCTCTGCCTCCTGACGGAATTTTGTCCCGGCGGCGACTTGCACGTGATCCGGCAACGTCAGCCGTTTAAACGCTTCGATGAAAGCGCCGTGAGGTTCTATGCATCCGAGGTAGTTGTCGCCTTAGAGTACCTTCACATGATGGGTATAGTTTACCGTGATCTAAAACCTGAAAATGTGCTAGTTCGATCTGACGGTCACATCATGCTCACTGATTTTGATCTCTCCTTAAGATGCGAAGATTCTACATCAACCCCTCAAGTTATCATCACCAATCAAAACCTGCCAAATCATCACAACCCGGCCCTACAAAACAACAACTCCCTTGATCCCCGTCCCTTTTCATCTTACTCTTCTTGCATTATTCCCAACTGCATTGTCCCTGCTGTCTCATGTTTCCACCCAAAGAGGAAGCATAGGAAGAAGTTGGGTCTACGTAATGGGGCCGAGTTTGTTGCGGAGCCCCTCGATGTCCGATCCATGTCATTCGTTGGGACCCATGAATACCTAGCCCCTGAGATCGTATCTGGTGAGGGCCATGGCAGTGCAGTGGATTGGTGGACCCTTGGAGTGTTTGTGTTCGAGATGTTTTATGGCGTGACACCATTTAGAGGGATGGACAATGAGCTAACCTTGGCTAACATCGTGGCTCGAGCCCTCGAGTTTCCTAAAGAACCGGCAATTCCTTCTACAGCTAAGGACTTGATCTCCCAGTTACTAGTCAAGGATCCCAACCGGCGACTGGGATCGGTTATGGGATCTTCTGCGATAAAGAATCATCCCTTTTTTAAAGGGGTAAATTGGGCATTGTTGAGATGTACAATGCCACCATTTGTCCCTCCACCATTTTCTAAAGATGATGTATCGGATGAAAGTAGTCCCCAAACCCCAATTGAGTATTATTAA 1383 49.89 MEPWLDDLADDLQSLSFTSTNTNRSISSCSDSTLTASFSSRLGSLPNKPHAPSSDPCWSAINLIKSESDSSTRQLSLSDLKFLLRLGSGDIGSVYLAELKSAGVVTDSAERCVFAAKVMDKKELVSRSKEGRARTEKEILELLDHPFLPTLYASIDAPKWLCLLTEFCPGGDLHVIRQRQPFKRFDESAVRFYASEVVVALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLRCEDSTSTPQVIITNQNLPNHHNPALQNNNSLDPRPFSSYSSCIIPNCIVPAVSCFHPKRKHRKKLGLRNGAEFVAEPLDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFEMFYGVTPFRGMDNELTLANIVARALEFPKEPAIPSTAKDLISQLLVKDPNRRLGSVMGSSAIKNHPFFKGVNWALLRCTMPPFVPPPFSKDDVSDESSPQTPIEYY 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5199629 5202911 + Conep01aG0055000.1 Cone1ag0527 431218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0527 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0527 460 PANTHER FLIPPASE KINASE 1-RELATED 27 443 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone1ag0527 460 FunFam serine/threonine-protein kinase D6PKL2 79 171 - -
Cone1ag0527 460 SUPERFAMILY Protein kinase-like (PK-like) 66 450 IPR011009 -
Cone1ag0527 460 Gene3D Transferase(Phosphotransferase) domain 1 318 440 - -
Cone1ag0527 460 FunFam serine/threonine-protein kinase D6PK-like 317 440 - -
Cone1ag0527 460 Gene3D Phosphorylase Kinase; domain 1 78 171 - -
Cone1ag0527 460 FunFam serine/threonine-protein kinase D6PK-like 172 239 - -
Cone1ag0527 460 CDD STKc_phototropin_like 78 446 - -
Cone1ag0527 460 ProSiteProfiles Protein kinase domain profile. 80 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0527 460 Gene3D Transferase(Phosphotransferase) domain 1 172 243 - -
Cone1ag0527 460 Pfam Protein kinase domain 319 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0527 460 Pfam Protein kinase domain 85 251 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0527 460 ProSiteProfiles AGC-kinase C-terminal domain profile. 423 460 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0527 460 SMART serkin_6 80 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0527 Cone-Chr1:5199629 Cone5ag1793 Cone-Chr5:12725115 1.60E-132 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone10ag0177 Cone-Chr10:861393 2.95E-125 wgd
Cone1ag0527 Cone-Chr1:5199629 Cone11ag1361 Cone-Chr11:9912074 5.05E-125 wgd
Cone1ag0527 Cone-Chr1:5199629 Cone13ag1200 Cone-Chr13:9287179 1.57E-125 wgd
Cone1ag0527 Cone-Chr1:5199629 Cone18ag0217 Cone-Chr18:1076442 9.12E-126 wgd
Cone1ag0527 Cone-Chr1:5199629 Cone19ag1184 Cone-Chr19:8299360 3.42E-125 wgd
Cone1ag0527 Cone-Chr1:5199629 Cone5ag1353 Cone-Chr5:8149607 2.51e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82467 PF16845 SQAPI 9.30E-24 CL0121 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0527 K08286 - csv:101207262 698.353