Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0529 ATGAGCGGCAGCGATTTTCGGAGACGGGGCCGTACAGACAACCGGAGTTTCAAGAATCAGAGGGTTATCCGTAGCGCCGAGGAAGAGCTCGAGTCAAAACTAGGGTTCGATCTCTTCTCAGAAGGCGAAACGAGGCTTGGGTGGTTGCTCACTTTAGCTACTTCATCTTGGGAGGATCAAGACACCAAGAAAGTCTATAGTTGTGTGGATCTTTATTTCGTAACACAGGATGGCTCCAGTTTCAAATCAAAGTACAAATTCCGCCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAAAGGGATGTTGAAGAGATTTTGAGACGCCGGTATGAAAGTCAGGTTGTTGATATTGAAATTGTGCAAAAAGAAGACCTTGATCTTAAAAACCATTTGTCTGGCCTGCGCAAATCATATCTTAAGTTATCGTTTCATACCATACAAGATTTGATGAACGTGAAGAGTGAACTTTTGCGTGTGGTTGAAAGAAACCAGGCAAAGTTTGATTCTATAGATGCTTATGATTCTATATTATCCGGGAAAAGGGAACAAAAACCACAAGACTTCCTAGAATGCATTGTAGATCTCCGAGAATATGATGTTCCTTATCATGTTCGCTTTGCTATTGACAATGATATTCGATGTGGACAATGGTATGATGTTAGTGTGTCTAGCATTGGTGTTATGCTTCAGAGGAGGACAGATCTTCTGCAACGTGCTGAAGTCCACATCTGTGCATTTGATATTGAGACCACAAAATTACCTTTGAAGTTTCCAGATGCTGAGTATGACATGGTAATGATGATATCTTACATGGTTGACGGACAAGGGTTCCTGATTATCAACAGAGAGTGTGTTGGCGATGATATTGAGGATCTTGAGTACACTCCTAAACCAGAATTTGAAGGCTTCTTTAAAGTTACAAATGTGAAAAGTGAAGTAGAACTTCTTAGGCTGTGGTTTGCCCATATGCGAGAGGTGAAGCCTGGTATCTATGTCACCTACAATGGTGACTATTTTGACTGGCCATTCTTGGAAAAAAGAGCAGCCTATCATGGACTAAAAATGAGTGATGAAATAGGATTTCATTGTGACCAGAATCAGGGAGAATGTCGTTCAAAATTTGCTTGTCATATGGATTGTTTTGCTTGGGTAAAGCGCGACAGTTATCTCCCTCAGGGTAGTCATGGCCTAAAGGCTGTTACAAAGACAAAATTGGGTTATGATCCTCTCGAGGTGAATCCAGAGGATATGGTTTGTTTTGCAAAGGAAAAGCCCCAGATGATGGCATCCTATTCTGTTTCTGATGCTGTTGCTACCTACTATTTATACATTACCTATGTTCATCCTTTCATTTTTTCTCTTGCTACTATTATCCCAATGCCCCCGGATGAGGTTTTGCGCAAAGGTAGTGGCACACTATGTGAAATGCTTCTTATGGTTCAGGCTTTCAAGGCAAATGTTATCTGCCCTAACAAACACCAGTCAGATCCAGAGAAGTTCTATAATAATCGGCTTCTTGAAAGTGAGACATACATAGGTGGCCATGTCGAATGCCTCGAGAGTGGTGTTTTTAGATCCGACCTTCCTACTAGTTTTAGGCTCGACCCATCTGCCTATGAGCAATTGATCAACAACCTCGATAGGGATTTACAATATGCCATAAAAGTTGAAGGTAAGATGGAATTAGAATCAGTGACCAATTATGATGACGTGAAGAATGCCATCATGGAAAAGCTCACGAGTCTGCAGAATGAACCTATACGTGAAGAATGCCCTCTCATATACCATCTTGATGTAGCCGCGATGTATCCAAACATTATATTAACGAACAGGCTTCAGCCACCTTCAATAGTGACAAATGAGATCTGTACTGCTTGTGATTTTAACCGGCCTGGAAAAACCTGTCTTCGAAAACTTGAATGGGTTTGGCGTGGAGAGATGTTCATGGGCAAAAGGAGTGACTATTATCATTTGAAGAGGCAAATCGAATCTGAATTAGTTGATAATGGTGATGGTCAGCTGTCAAAATCTTTTCTTGACCTACCTAAGATGGAGCAACAAATGAGGCTAAAAGAGCGTCTGAAGAAATACTGTCAGAAGGCTTATAAACGGGTACTCGACAAGCCAATCACTGAAGTCCGAGAAGCAGGGGTCTGCATGAGAGAAAACTCCTTCTATGTTGACACTGTACGCAGCTTTCGAGATAGAAGATATGAATACAAAGGACTTAATAAAGCATGGAAAGGGAAGTTATCAGAAGCAAAAGCAAGTGGAAACTCAATCAAAATTCAAGAAGCACAAGACATGGTAGTTCTTTATGACTCTTTACAGCTCGCTCATAAATGTATACTTAACTCCTTCTATGGATACGTTATGCGCAAGGGTGCCAGATGGTATTCAATGGAAATGGCTGGTGTAGTTACATATACAGGAGCAAAGATCATTCAAAATGCTCGATTGCTTGTGGAGAAAATTGGAAAACCTCTTGAGTTGGATACAGATGGTATATGGTGTGCACTCCCCGGATCATTCCCAGAGAGCTTCACTTTCAAAACAAACGACCCGAAGAAGAAGCTAACAATCTCATACCCATGTGTCATGCTTAATGTTGACGTGGCAAGGAATAATACAAATGATCAATACCAGATGCTTATAGATCCTATCAAGAAAATTTATTCGACTCACAGTGAATGCTCAATTGAATTTGAAGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCTAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACAATTGCGGAGCTGAAAGGTTTTGAGATCAAGCGTAGAGGAGAGCTAAAGCTCATCAAAGTTTTCCAGGCGGAGCTCTTTGACAAATTTCTCCGTGGATCAACCTTAGAGGGATGTTATTCAGCAGTTGCTGCTGTTGCAAATCGCTGGCTTGATCTGTTAGATAATCAAGGAAAGGATGTTGCGGATAGTGAGTTGCTGGATTATATTTCAGAATCAAGTACCATGAGCAAGTCTTTAGCAGACTATGGTGCACAGAAGTCGTGCGCTGTGACCACTGCAAGACGTCTTTCTGATTTTCTTGGTGATGGGATGGTCAAAGATAAAGGCCTGCGATGTCAGTACATAGTTGCATGTGAACCTAGGGGAACACCTGTGAGTGAGCGTGCTGTACCTGTAGCGATATTTGAGACTGATGCAGATATAATGAAGTTTTATGTACATAAATGGTGCAAGATTTCATCAGAAATCGGGATTAGATCCATCATTGACTGGTCATACTACAAGCAACGACTTGGTTCAGCAATTCAAAAAATCATCACAATTCCTGCTGCCATGCAAAAGGTTGCCAACCCTGTCCCTAGGGTGGTTCATCCAGATTGGCTGCATAAGAAAGTTCGTGAAAAGGAGGATAAATTTCGGCAAAGGAAGTTAGTCGATGTGTTTAGGTCCTTGAACAGGAATAATATGTCAAAAGAGAGCGATGCTTCTAATGGCACTGATCCTGTGGTGGAGAATGCTGAAGATTTGGAAGACTTCTCAAAGAAAACAAGCTCCATAGATGGACCCAGACCAGTGGTTCGTCACTATGAATTTACTGGTGTGAGAGATTCAATCGAGAGCAATGGGCAAGTGAATTCCCTGCAGCAACACTGTCGTAACAGTGAACATGTGTGTAGTTCAACTTCACCATTGGAATCTCTAAATATTGACCGAAAGATAGATTATCAAGGATGGCTAGAAACAAAGAAGCGGAAGTGGAAGGATTTGCTGGACAAAAGGAAGAGGATAAGGTTGGGAAATTCAAGGAGTGCACTTAATGCTAATGATATTTCTAAGGAACTGGGTAGTGTCATGAGTCAGAAAGAAGCTCAAGGCAGAACAGCTGTTAGTTCATATTTTAAGAGGCAAGAAATAGCTCTAACACGCTGCCATTGGCAGATTTTACAGCTCATTCCGAGCTCAAAATCTGGCCAGTTTTTTGCTTGGATAGTTGTTGACGGAATCATGCTTAAGATTCCTATCACTGTTCCTAGAGTCTTTTATCTCAACTCGAAAGCACCTATAACAGAAGCATTTATGGGGAGGCATGTCAATAAGATTCTTCCTCATGGAAGACATAGCTACAACCTATATGAGGTTGAAATTGACGAACCTCAGTTTAGGCAACAACGCAGTAAGCTTGCAGCTCTTCTTGGAGATCCAGAGGTTGAGGGAATATTTGAAACAAAAGTGCCATTGGACTTTAATGCCATCCTCCAGCTTGGCTGTGTCTGCAAAGTTGATAAAGCGGCTAAGAAACGAAACATTCAGGATGGATGGAGCCTGTGTGAACTAAACAGGAAGACTACCACAGAATGCCATTATCTGGAGAAATCTCTCTCTTTCTTCTACTTGTATCATAGCATTTCCGAGACCCGGGCTATTTATGCCATGTACTTTCCAGCTTCAAGATCAATATATGTGGTGGTAGTTAATCCTTATCAGAATAAGGACTTGTCACCTGGTTTTCTAGAAAAACAATTCCGTGAGGCTTGCCAAGCATTGTCTGTTCAATCTGATCCCCCAAGCAGTGGTATCAATTTCAAGGTGGACTATGTTGGACATGTCAAGGATGCTGAGACAATTGTGCATAGAGCAGTAACTGAGGAAAGACATGAGCATCATGGCCCTACAATAGCTGTCATTGAGTGTCCCAATACTCAATTATTGAAGTTGGGTATTCGAGCTCTAGAAGTTTTCCCATGTGTGAACATCCCTTCCAATGCTCGTGATTGTCAGTATCAGGCTCTTGGATGGCAACAAGTGGCAGCAAAAATTGGAATGCAACGGTGTGCCGCATCATCCCAGTGGTTGAATGAGAGAATTTCTCTAGCAAGATATGCCCATGTGCCATTGGGAAATTTTGAAATTGACTGGCTCCTATTTACAGCCGATGTCTTCTATTCAAGAGATCTACGGTATCAGCAACAGGTACTTTGGATATCAGATGATGGTGTTCCTGATCTAGGAGGCATTTGTGAAGAAGACACATGTTTTCTTGATGAGGTTCAACAACCTGTCCTGACATACCCTGGAGCATACAGAAAAATTTCTGTGGAGCTAAAGATTCATAATCTCGCTGTAGATGCTCTTTTGAAGAGCAGCCAAGTGAATGAAATGGAAGGAAGTGCGTTCTTTGGATTTGATCAAGAAATGAACTCTGGAGCACAAATTTCAAATGGACAAGGGGGCTTTGATGAGGCTGCCTCATATGCACCTGCATTTCATGTCTTGAAACAGTTGATACATAAATGCCTTCAAGATGCTATTAACTCTGGAAATGTCTATGCAGATTCAATACTGCAGCATCTTTACCGATGGATTTGCAGCCCCCGCTCAAGACTTCATGACCCAGCTCTACATCGAGTACTTCACAAGGTTATGCAAAAGGTGTTTGCGTTATTGTTGGCCGAATTGCGGAAATTAGGTGCTACCGTCATTTTTGCAAACTTTTCAAGGATTATCATTGACACGGGAAAGTTTGAACTCTCTGCTGCTAAAGCTTACTGTGATAGTCTGCTTACAACCTTGCAAACAAGGGATCTTTTTGAATGGATTCAGTTGGAAACACAGCAGTTTTGGCATTCCTTACTGTTTATGGATCAGTACAACTATGGTGGAATTCTGGCAAAAGAAGATGCAAGCACCATAGCTGATGGATCTCAAGTTGACGTTGTGTCAAATTGGAATATTGCTGAGTACCTACCAAAGGAAATTCAGGATCAGTTTGTTTACATCGTCTCTCAGTTTTTGTACATCCCTTGGAATCATGCAACAAAACAAACTGCCACCTTAGAATCTTTGCAACATGATGACTCTTGTACACCTTCCATTACTATTGGAGCTGCTGAATTGCGTGAATCACATGTGACTGAGTATCTTAAAGAACAGATAAACTCTTACTTCACGGACAAGCTATTGGGGATTGTTCATACTCTTCTTCATATGAAGGGTTTAAATAAATCAGAGAAAGAGCAAGAGAATTTGCCTGCTCTTTTTCAACGGCATTCTGGTAGTAACAATAACCACAAAGGGGATGCTGCACTGGAATTTGTTAAGCATGTCTGTGCTGTTTTAACCCTTGATCAAAATGTTCTGCATGAAGTACTGGTGATGAGAAGAAATCTACTGAAATATTTGCTCGTGAGGGAGTTTGCTCCAGAAGCTCAGTTTGTCAATCCATGCCCATCTTTTATCCTTCCAGATGTTATTTGCAGCCGTTGCAGTAACTGTCAAGATATAGATCTGTGCCGTGACCCAGCCTTACAGGCTCAAGAGTGGTGTTGTGCTGAGCCACAGTGCGGCCAACCTTATGACCGTCAGCTCATCGAAAATTCTCTTCTTCAGATTGTACGGCAGAGAGAGCGTCTCTTCCACTTACAAGATCTAGTGTGCGTTAGATGTAATAATAACAAAGTTGCTCATGTAGCTGAACATTGTTCTTGTGGCGGGTCCTTTAGATGCAAGGAGGACCCCGCTGAACACCTCAACAAGATGAAGATTATTAATGATATAGCCTTTAGGCAGAAATTCGAACTGCTCCAAGAGTTTACTTCTTGGATCCTAGAATCTCGATAA 6645 41.52 MSGSDFRRRGRTDNRSFKNQRVIRSAEEELESKLGFDLFSEGETRLGWLLTLATSSWEDQDTKKVYSCVDLYFVTQDGSSFKSKYKFRPYFYAATKDKMERDVEEILRRRYESQVVDIEIVQKEDLDLKNHLSGLRKSYLKLSFHTIQDLMNVKSELLRVVERNQAKFDSIDAYDSILSGKREQKPQDFLECIVDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSIGVMLQRRTDLLQRAEVHICAFDIETTKLPLKFPDAEYDMVMMISYMVDGQGFLIINRECVGDDIEDLEYTPKPEFEGFFKVTNVKSEVELLRLWFAHMREVKPGIYVTYNGDYFDWPFLEKRAAYHGLKMSDEIGFHCDQNQGECRSKFACHMDCFAWVKRDSYLPQGSHGLKAVTKTKLGYDPLEVNPEDMVCFAKEKPQMMASYSVSDAVATYYLYITYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAFKANVICPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDLPTSFRLDPSAYEQLINNLDRDLQYAIKVEGKMELESVTNYDDVKNAIMEKLTSLQNEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTNEICTACDFNRPGKTCLRKLEWVWRGEMFMGKRSDYYHLKRQIESELVDNGDGQLSKSFLDLPKMEQQMRLKERLKKYCQKAYKRVLDKPITEVREAGVCMRENSFYVDTVRSFRDRRYEYKGLNKAWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPESFTFKTNDPKKKLTISYPCVMLNVDVARNNTNDQYQMLIDPIKKIYSTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTIAELKGFEIKRRGELKLIKVFQAELFDKFLRGSTLEGCYSAVAAVANRWLDLLDNQGKDVADSELLDYISESSTMSKSLADYGAQKSCAVTTARRLSDFLGDGMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDADIMKFYVHKWCKISSEIGIRSIIDWSYYKQRLGSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDVFRSLNRNNMSKESDASNGTDPVVENAEDLEDFSKKTSSIDGPRPVVRHYEFTGVRDSIESNGQVNSLQQHCRNSEHVCSSTSPLESLNIDRKIDYQGWLETKKRKWKDLLDKRKRIRLGNSRSALNANDISKELGSVMSQKEAQGRTAVSSYFKRQEIALTRCHWQILQLIPSSKSGQFFAWIVVDGIMLKIPITVPRVFYLNSKAPITEAFMGRHVNKILPHGRHSYNLYEVEIDEPQFRQQRSKLAALLGDPEVEGIFETKVPLDFNAILQLGCVCKVDKAAKKRNIQDGWSLCELNRKTTTECHYLEKSLSFFYLYHSISETRAIYAMYFPASRSIYVVVVNPYQNKDLSPGFLEKQFREACQALSVQSDPPSSGINFKVDYVGHVKDAETIVHRAVTEERHEHHGPTIAVIECPNTQLLKLGIRALEVFPCVNIPSNARDCQYQALGWQQVAAKIGMQRCAASSQWLNERISLARYAHVPLGNFEIDWLLFTADVFYSRDLRYQQQVLWISDDGVPDLGGICEEDTCFLDEVQQPVLTYPGAYRKISVELKIHNLAVDALLKSSQVNEMEGSAFFGFDQEMNSGAQISNGQGGFDEAASYAPAFHVLKQLIHKCLQDAINSGNVYADSILQHLYRWICSPRSRLHDPALHRVLHKVMQKVFALLLAELRKLGATVIFANFSRIIIDTGKFELSAAKAYCDSLLTTLQTRDLFEWIQLETQQFWHSLLFMDQYNYGGILAKEDASTIADGSQVDVVSNWNIAEYLPKEIQDQFVYIVSQFLYIPWNHATKQTATLESLQHDDSCTPSITIGAAELRESHVTEYLKEQINSYFTDKLLGIVHTLLHMKGLNKSEKEQENLPALFQRHSGSNNNHKGDAALEFVKHVCAVLTLDQNVLHEVLVMRRNLLKYLLVREFAPEAQFVNPCPSFILPDVICSRCSNCQDIDLCRDPALQAQEWCCAEPQCGQPYDRQLIENSLLQIVRQRERLFHLQDLVCVRCNNNKVAHVAEHCSCGGSFRCKEDPAEHLNKMKIINDIAFRQKFELLQEFTSWILESR 2214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5232965 5261961 + Conep01aG0055200.1 Cone1ag0529 431220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0529 2214 Gene3D Palm domain of DNA polymerase 582 938 IPR023211 -
Cone1ag0529 2214 FunFam DNA polymerase epsilon catalytic subunit 241 469 - -
Cone1ag0529 2214 Pfam Zinc finger domain of DNA polymerase-epsilon 2149 2211 IPR054475 -
Cone1ag0529 2214 CDD POLBc_epsilon 504 1123 - -
Cone1ag0529 2214 FunFam DNA polymerase epsilon catalytic subunit 757 938 - -
Cone1ag0529 2214 FunFam DNA polymerase epsilon catalytic subunit 57 228 - -
Cone1ag0529 2214 SMART DUF1744_2 1512 1897 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cone1ag0529 2214 FunFam DNA polymerase epsilon catalytic subunit 942 1126 - -
Cone1ag0529 2214 Gene3D DNA Polymerase, chain B, domain 1 56 232 - -
Cone1ag0529 2214 Pfam DNA polymerase family B, exonuclease domain 195 401 IPR006133 -
Cone1ag0529 2214 SUPERFAMILY DNA/RNA polymerases 470 1142 IPR043502 -
Cone1ag0529 2214 SMART polmehr3 240 843 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Cone1ag0529 2214 CDD DNA_polB_epsilon_exo 241 445 - -
Cone1ag0529 2214 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 947 1122 - -
Cone1ag0529 2214 Pfam Domain of unknown function (DUF1744) 1530 1897 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Cone1ag0529 2214 Gene3D - 942 1126 IPR042087 -
Cone1ag0529 2214 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 8 2180 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(PANTHER)|GO:0003887(InterPro)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Cone1ag0529 2214 SUPERFAMILY Ribonuclease H-like 59 468 IPR012337 -
Cone1ag0529 2214 Gene3D - 243 443 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1351 Cone-Chr5:8135253 Cone1ag0529 Cone-Chr1:5232965 1.74E-101 transposed
Cone1ag0529 Cone-Chr1:5232965 Cone5ag1350 Cone-Chr5:8134247 8.64E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0529 K02324 - csv:101208568 3563.47