Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0533 | ATGGCGAGCCATGGAGTTGGAGAAAGCACTAGTGGACCTTCTAATCACCTTCATCTTCCTAATTATTCTCTTTTTCATGGATTTAATCATTACCCATCCCCCATTTTCAGTAATCAAGAAAGATCATCGGTCTTTGCTTTTGGAGAGCTGGAACAAGCAATTGGGCTCCAAGGAGACGGAGTTAACGCCAGAACAACTTTTTTAGGAGGGATATCATCTGCATCAACGTCTCTGAAAATGTCCCCTTCTTGGCCAATGGGATCAATCCACCACACCCCAACAGTTAACCAGGAACAAGTTAATTTTGAGGGGAGTTCAAAATCAGGAGAGGAAAGCACAGAGGAGGCGGGATCAGCTGCGAACACGCTTACAAGCAGAGCTCATCATGATCATGGCGCCCACTTATTAGAATCAGAATCTCCGATGAGTAATGATAAAAGAGCAGCTTCCTCTTCTTCAGATCATGATCATCATCAGGTGTTCGATCATAATCTTCATGATCTAACGGTTGATATGGCGAGTGATGCCCACGTGTCGATATTAGAATTATCACCACATCAATCAGCTGTTGGACCATCACAGCCAAAGAGGAGAGGAGCTGGTTCCGCAACAAAGAAACAAGTTGACGCCAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAAAAAGAGCCGCCTCCGGAAAAAGGCTTATGTACAGCAACTAGAATCAAGTAGATCTAGGCTGTCTCAGCTTGAACAAGATCTCCAACGAGCCCGCTCTCAGGGACTGTTATTGGGTGCTTTCGGTACTGCAGCCGGAAATATTAGCTCCGGAGGAGCTATATTTGACATGGAGTATGCAAGGTGGCTAGAAGACGAGAAAGGACACATGGTGGAGCTCAGGTCAGCACTGCAAGCTTGTTTATCAGACGACGATCTCAGACAAATAGTTGACAATTACGTTTCACATTACGACAAGATATTCCGGCTAAAATCCACAGCGGCAAAATCCGATGTCTTCCATCTAATTACCGGAATGTGGGTCACTCCTGCTGAACGTTGCTTCCTTTGGATGGCCGGTTTTAAGCCCTCCGATCTCATCAAGATGTTGATAACGCAAGTGGACCCGCTAACAGAGCAACAAGTGATGGAAATATGCAAGCTCGAACGGTCAGTAGAACAAGCAGAAGATGCTCTCTCACAAGGTCAAGACCAGGTCCAGCAATCTCTTATCGAGACCATTGCGGCTTCTCCTCCTATTATCACTGATGACATTAACCAAATGGCCATGACCATGGCCATTAACAGGCTTTCCAATCTTGAAGCCTTTGTTCACCAGGCTGATGTATTGAGACAACAAACCCTTCATCAATTACGTCGCATATTGACGGTAAGACAAGCGACAAAATATTTTCTTGTGATTGGTGAATACTACAACAGATTACGAGCCCTGAGCACTTTGTGGACCTCTCGGCCGGGAGAAGCCTTGATAAAACATGATCACAACTTGTGCCAACAGACCACCTCGGAGCTGCAAGTGATTCATCAAAACTCGCAGACTCATTTCTCAAACCTCTGA | 1566 | 45.47 | MASHGVGESTSGPSNHLHLPNYSLFHGFNHYPSPIFSNQERSSVFAFGELEQAIGLQGDGVNARTTFLGGISSASTSLKMSPSWPMGSIHHTPTVNQEQVNFEGSSKSGEESTEEAGSAANTLTSRAHHDHGAHLLESESPMSNDKRAASSSSDHDHHQVFDHNLHDLTVDMASDAHVSILELSPHQSAVGPSQPKRRGAGSATKKQVDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRSRLSQLEQDLQRARSQGLLLGAFGTAAGNISSGGAIFDMEYARWLEDEKGHMVELRSALQACLSDDDLRQIVDNYVSHYDKIFRLKSTAAKSDVFHLITGMWVTPAERCFLWMAGFKPSDLIKMLITQVDPLTEQQVMEICKLERSVEQAEDALSQGQDQVQQSLIETIAASPPIITDDINQMAMTMAINRLSNLEAFVHQADVLRQQTLHQLRRILTVRQATKYFLVIGEYYNRLRALSTLWTSRPGEALIKHDHNLCQQTTSELQVIHQNSQTHFSNL | 521 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5313450 | 5317722 | - | Conep01aG0055600.1 | Cone1ag0533 | 431224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0533 | 521 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 214 | 229 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0533 | 521 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 82 | 490 | - | - | |
Cone1ag0533 | 521 | Coils | Coil | 388 | 408 | - | - | |
Cone1ag0533 | 521 | Coils | Coil | 230 | 257 | - | - | |
Cone1ag0533 | 521 | ProSiteProfiles | DOG1 domain profile. | 275 | 487 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone1ag0533 | 521 | SUPERFAMILY | Leucine zipper domain | 211 | 254 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0533 | 521 | Pfam | Seed dormancy control | 292 | 367 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Cone1ag0533 | 521 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 209 | 253 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0533 | 521 | Gene3D | - | 210 | 260 | - | - | |
Cone1ag0533 | 521 | MobiDBLite | consensus disorder prediction | 185 | 211 | - | - | |
Cone1ag0533 | 521 | SMART | brlzneu | 207 | 273 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0533 | 521 | CDD | bZIP_HBP1b-like | 211 | 262 | - | - | |
Cone1ag0533 | 521 | MobiDBLite | consensus disorder prediction | 86 | 120 | - | - | |
Cone1ag0533 | 521 | MobiDBLite | consensus disorder prediction | 136 | 158 | - | - | |
Cone1ag0533 | 521 | Pfam | bZIP transcription factor | 210 | 252 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cone1ag0533 | 521 | FunFam | BZIP family transcription factor | 210 | 259 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0533 | Cone-Chr1:5313450 | Cone3ag0081 | Cone-Chr3:472652 | 6.95E-101 | dispersed | |
Cone1ag0533 | Cone-Chr1:5313450 | Cone11ag1384 | Cone-Chr11:10034801 | 1.59E-109 | wgd | |
Cone1ag0533 | Cone-Chr1:5313450 | Cone18ag0202 | Cone-Chr18:998637 | 1.24E-141 | wgd | |
Cone1ag0533 | Cone-Chr1:5313450 | Cone5ag1347 | Cone-Chr5:8085681 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45441 | PF04690 | YABBY | 3.40E-69 | CL0114 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0533 | K14431 | - | rcu:8271908 | 488.419 |