Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0533 ATGGCGAGCCATGGAGTTGGAGAAAGCACTAGTGGACCTTCTAATCACCTTCATCTTCCTAATTATTCTCTTTTTCATGGATTTAATCATTACCCATCCCCCATTTTCAGTAATCAAGAAAGATCATCGGTCTTTGCTTTTGGAGAGCTGGAACAAGCAATTGGGCTCCAAGGAGACGGAGTTAACGCCAGAACAACTTTTTTAGGAGGGATATCATCTGCATCAACGTCTCTGAAAATGTCCCCTTCTTGGCCAATGGGATCAATCCACCACACCCCAACAGTTAACCAGGAACAAGTTAATTTTGAGGGGAGTTCAAAATCAGGAGAGGAAAGCACAGAGGAGGCGGGATCAGCTGCGAACACGCTTACAAGCAGAGCTCATCATGATCATGGCGCCCACTTATTAGAATCAGAATCTCCGATGAGTAATGATAAAAGAGCAGCTTCCTCTTCTTCAGATCATGATCATCATCAGGTGTTCGATCATAATCTTCATGATCTAACGGTTGATATGGCGAGTGATGCCCACGTGTCGATATTAGAATTATCACCACATCAATCAGCTGTTGGACCATCACAGCCAAAGAGGAGAGGAGCTGGTTCCGCAACAAAGAAACAAGTTGACGCCAAGACATTGAGACGTTTAGCACAAAACAGGGAAGCTGCAAAAAAGAGCCGCCTCCGGAAAAAGGCTTATGTACAGCAACTAGAATCAAGTAGATCTAGGCTGTCTCAGCTTGAACAAGATCTCCAACGAGCCCGCTCTCAGGGACTGTTATTGGGTGCTTTCGGTACTGCAGCCGGAAATATTAGCTCCGGAGGAGCTATATTTGACATGGAGTATGCAAGGTGGCTAGAAGACGAGAAAGGACACATGGTGGAGCTCAGGTCAGCACTGCAAGCTTGTTTATCAGACGACGATCTCAGACAAATAGTTGACAATTACGTTTCACATTACGACAAGATATTCCGGCTAAAATCCACAGCGGCAAAATCCGATGTCTTCCATCTAATTACCGGAATGTGGGTCACTCCTGCTGAACGTTGCTTCCTTTGGATGGCCGGTTTTAAGCCCTCCGATCTCATCAAGATGTTGATAACGCAAGTGGACCCGCTAACAGAGCAACAAGTGATGGAAATATGCAAGCTCGAACGGTCAGTAGAACAAGCAGAAGATGCTCTCTCACAAGGTCAAGACCAGGTCCAGCAATCTCTTATCGAGACCATTGCGGCTTCTCCTCCTATTATCACTGATGACATTAACCAAATGGCCATGACCATGGCCATTAACAGGCTTTCCAATCTTGAAGCCTTTGTTCACCAGGCTGATGTATTGAGACAACAAACCCTTCATCAATTACGTCGCATATTGACGGTAAGACAAGCGACAAAATATTTTCTTGTGATTGGTGAATACTACAACAGATTACGAGCCCTGAGCACTTTGTGGACCTCTCGGCCGGGAGAAGCCTTGATAAAACATGATCACAACTTGTGCCAACAGACCACCTCGGAGCTGCAAGTGATTCATCAAAACTCGCAGACTCATTTCTCAAACCTCTGA 1566 45.47 MASHGVGESTSGPSNHLHLPNYSLFHGFNHYPSPIFSNQERSSVFAFGELEQAIGLQGDGVNARTTFLGGISSASTSLKMSPSWPMGSIHHTPTVNQEQVNFEGSSKSGEESTEEAGSAANTLTSRAHHDHGAHLLESESPMSNDKRAASSSSDHDHHQVFDHNLHDLTVDMASDAHVSILELSPHQSAVGPSQPKRRGAGSATKKQVDAKTLRRLAQNREAAKKSRLRKKAYVQQLESSRSRLSQLEQDLQRARSQGLLLGAFGTAAGNISSGGAIFDMEYARWLEDEKGHMVELRSALQACLSDDDLRQIVDNYVSHYDKIFRLKSTAAKSDVFHLITGMWVTPAERCFLWMAGFKPSDLIKMLITQVDPLTEQQVMEICKLERSVEQAEDALSQGQDQVQQSLIETIAASPPIITDDINQMAMTMAINRLSNLEAFVHQADVLRQQTLHQLRRILTVRQATKYFLVIGEYYNRLRALSTLWTSRPGEALIKHDHNLCQQTTSELQVIHQNSQTHFSNL 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5313450 5317722 - Conep01aG0055600.1 Cone1ag0533 431224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0533 521 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 214 229 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0533 521 PANTHER TRANSCRIPTION FACTOR TGA9 82 490 - -
Cone1ag0533 521 Coils Coil 388 408 - -
Cone1ag0533 521 Coils Coil 230 257 - -
Cone1ag0533 521 ProSiteProfiles DOG1 domain profile. 275 487 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone1ag0533 521 SUPERFAMILY Leucine zipper domain 211 254 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0533 521 Pfam Seed dormancy control 292 367 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone1ag0533 521 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 209 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0533 521 Gene3D - 210 260 - -
Cone1ag0533 521 MobiDBLite consensus disorder prediction 185 211 - -
Cone1ag0533 521 SMART brlzneu 207 273 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0533 521 CDD bZIP_HBP1b-like 211 262 - -
Cone1ag0533 521 MobiDBLite consensus disorder prediction 86 120 - -
Cone1ag0533 521 MobiDBLite consensus disorder prediction 136 158 - -
Cone1ag0533 521 Pfam bZIP transcription factor 210 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0533 521 FunFam BZIP family transcription factor 210 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0533 Cone-Chr1:5313450 Cone3ag0081 Cone-Chr3:472652 6.95E-101 dispersed
Cone1ag0533 Cone-Chr1:5313450 Cone11ag1384 Cone-Chr11:10034801 1.59E-109 wgd
Cone1ag0533 Cone-Chr1:5313450 Cone18ag0202 Cone-Chr18:998637 1.24E-141 wgd
Cone1ag0533 Cone-Chr1:5313450 Cone5ag1347 Cone-Chr5:8085681 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45441 PF04690 YABBY 3.40E-69 CL0114 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0533 K14431 - rcu:8271908 488.419