Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0555 ATGTCCGCTTCTCGATCTGCAAATCAATTGCATCAGCCGCCTGAGCAGATCATGCAGCCTTTGAAGCGGCAGCTTCCCTTTTCTTCCATGAAACCGCCGTTCTCTGCTGCTCCCAATGACTACCACCGATTTTCCCCTGACCCTCGGTTAGTTTCCGATCAGGAAGCTGAGATCATCGTAGTGAAAACTCCGTTAAAGAGAAAGAGTGATGGAGCAGATTATGAAGCTGAGTCCAGTGATAGAACTGGTCCTGGATTCACCGAAGTTGTTAACAGCTCCTTCCAGACGCCTGTATCGGTAAAAGGGGGAAAGGGATACAAAGCAAGGCTTACGAAATGTAATAAATCAGGACCTTTTACTCCTGTTTCAAATGCAGGTTCACCTTCTGGAAACAATCTAACTCCAGCCGGTTCATGCCGATATGACAGCTCACTGGGTCTCTTGACAAAAAAGTTTATTAATCTGATCAAACACGCGGAAGACGGTATTCTTGATCTAAATAAAGCAGCCGACACTTTAGAGGTGCAAAAGAGACGGATATATGATATAACAAATGTACTTGAAGGAATTGGTCTCATAGAAAAAACGCTCAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGACCAGGGGATGCCGATGATAACTATGGTACTTTACAGGAAGATGTTGAAAACCTTACCATTCAGGAGCAAAGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTGAGGGACCTCAGTGAAGAAGAAAACAATCAAAGGTGGCTTTTTGTCACAGAGGAAGATATCAAGGGCTTGCCTTGTTTCCAGAATGAGACACTAATCGCTATTAAAGCTCCACATGGCACAACTTTAGAGGTTCCGGATCCAGACGAGGCTGTTGATTATCCCCAAAGAAGGTATCGGATAGTCCTAAGAAGTACGATGGGTCCCATTGATGTTTTCCTAGTCAGTCAATTTGAAGAGAAGTTTGAGGAGTTAAACGGTGCAGAAGCAGGTCAAAGCTTACCATCAACCTCAGGATTCAATGACACCTCAACAATAGCAATGGCAGATGAGAGTAGAGGGAAGGAAATAAAAATGCAAGAGCAAGATGTTCATAGAATTTGCTCAGATCTTAACGCCTCACAGGACTTTGTGGGCGGGATAATGAAGATTGTTCCCTCAGCCATTGATAGTGATGCAGATTACTGGCTTTTATCCGATGCTGATGTCAGCATCACTGATATGTGGAGAACGGAATCTGGAATTGAATGGAATGAGTTTAGCACACTGGAAGAAGATTACACTTTGCCCATTGTGAGCACCCCAAGACTCGAAGCCCCTCCCCCCAATCCAGCTGAGCCACCACCTGCGGCCCACCCTTCCAGCAGCTAA 1386 44.59 MSASRSANQLHQPPEQIMQPLKRQLPFSSMKPPFSAAPNDYHRFSPDPRLVSDQEAEIIVVKTPLKRKSDGADYEAESSDRTGPGFTEVVNSSFQTPVSVKGGKGYKARLTKCNKSGPFTPVSNAGSPSGNNLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSRPGDADDNYGTLQEDVENLTIQEQRLDEQIREMQERLRDLSEEENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVFLVSQFEEKFEELNGAEAGQSLPSTSGFNDTSTIAMADESRGKEIKMQEQDVHRICSDLNASQDFVGGIMKIVPSAIDSDADYWLLSDADVSITDMWRTESGIEWNEFSTLEEDYTLPIVSTPRLEAPPPNPAEPPPAAHPSSS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5528938 5534277 - Conep01aG0057800.1 Cone1ag0555 431246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0555 461 PANTHER TRANSCRIPTION FACTOR E2F 31 416 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone1ag0555 461 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0555 461 MobiDBLite consensus disorder prediction 69 89 - -
Cone1ag0555 461 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 1 48 - -
Cone1ag0555 461 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 440 461 - -
Cone1ag0555 461 CDD E2F_DD 221 322 IPR032198 GO:0046983(InterPro)
Cone1ag0555 461 FunFam E2F transcription factor 1 134 207 - -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 1 15 - -
Cone1ag0555 461 Gene3D - 213 322 - -
Cone1ag0555 461 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Cone1ag0555 461 Coils Coil 218 259 - -
Cone1ag0555 461 Gene3D - 134 207 IPR036388 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 436 461 - -
Cone1ag0555 461 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0130 Cone-Chr16:738356 Cone1ag0555 Cone-Chr1:5528938 5.82E-09 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone3ag0151 Cone-Chr3:841787 1.01E-175 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone10ag0135 Cone-Chr10:701793 9.76E-172 wgd
Cone1ag0555 Cone-Chr1:5528938 Cone5ag1327 Cone-Chr5:7825728 4.41E-305 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45443 PF00149 Metallophos 7.90E-36 CL0163 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0555 K06620 - csv:101219318 686.411