Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0555 ATGTCCGCTTCTCGATCTGCAAATCAATTGCATCAGCCGCCTGAGCAGATCATGCAGCCTTTGAAGCGGCAGCTTCCCTTTTCTTCCATGAAACCGCCGTTCTCTGCTGCTCCCAATGACTACCACCGATTTTCCCCTGACCCTCGGTTAGTTTCCGATCAGGAAGCTGAGATCATCGTAGTGAAAACTCCGTTAAAGAGAAAGAGTGATGGAGCAGATTATGAAGCTGAGTCCAGTGATAGAACTGGTCCTGGATTCACCGAAGTTGTTAACAGCTCCTTCCAGACGCCTGTATCGGTAAAAGGGGGAAAGGGATACAAAGCAAGGCTTACGAAATGTAATAAATCAGGACCTTTTACTCCTGTTTCAAATGCAGGTTCACCTTCTGGAAACAATCTAACTCCAGCCGGTTCATGCCGATATGACAGCTCACTGGGTCTCTTGACAAAAAAGTTTATTAATCTGATCAAACACGCGGAAGACGGTATTCTTGATCTAAATAAAGCAGCCGACACTTTAGAGGTGCAAAAGAGACGGATATATGATATAACAAATGTACTTGAAGGAATTGGTCTCATAGAAAAAACGCTCAAAAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGACCAGGGGATGCCGATGATAACTATGGTACTTTACAGGAAGATGTTGAAAACCTTACCATTCAGGAGCAAAGATTAGATGAACAAATAAGAGAAATGCAGGAAAGATTGAGGGACCTCAGTGAAGAAGAAAACAATCAAAGGTGGCTTTTTGTCACAGAGGAAGATATCAAGGGCTTGCCTTGTTTCCAGAATGAGACACTAATCGCTATTAAAGCTCCACATGGCACAACTTTAGAGGTTCCGGATCCAGACGAGGCTGTTGATTATCCCCAAAGAAGGTATCGGATAGTCCTAAGAAGTACGATGGGTCCCATTGATGTTTTCCTAGTCAGTCAATTTGAAGAGAAGTTTGAGGAGTTAAACGGTGCAGAAGCAGGTCAAAGCTTACCATCAACCTCAGGATTCAATGACACCTCAACAATAGCAATGGCAGATGAGAGTAGAGGGAAGGAAATAAAAATGCAAGAGCAAGATGTTCATAGAATTTGCTCAGATCTTAACGCCTCACAGGACTTTGTGGGCGGGATAATGAAGATTGTTCCCTCAGCCATTGATAGTGATGCAGATTACTGGCTTTTATCCGATGCTGATGTCAGCATCACTGATATGTGGAGAACGGAATCTGGAATTGAATGGAATGAGTTTAGCACACTGGAAGAAGATTACACTTTGCCCATTGTGAGCACCCCAAGACTCGAAGCCCCTCCCCCCAATCCAGCTGAGCCACCACCTGCGGCCCACCCTTCCAGCAGCTAA 1386 44.59 MSASRSANQLHQPPEQIMQPLKRQLPFSSMKPPFSAAPNDYHRFSPDPRLVSDQEAEIIVVKTPLKRKSDGADYEAESSDRTGPGFTEVVNSSFQTPVSVKGGKGYKARLTKCNKSGPFTPVSNAGSPSGNNLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKTLKNRIQWKGLDVSRPGDADDNYGTLQEDVENLTIQEQRLDEQIREMQERLRDLSEEENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVFLVSQFEEKFEELNGAEAGQSLPSTSGFNDTSTIAMADESRGKEIKMQEQDVHRICSDLNASQDFVGGIMKIVPSAIDSDADYWLLSDADVSITDMWRTESGIEWNEFSTLEEDYTLPIVSTPRLEAPPPNPAEPPPAAHPSSS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5528938 5534277 - Conep01aG0057800.1 Cone1ag0555 431246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0555 461 PANTHER TRANSCRIPTION FACTOR E2F 31 416 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cone1ag0555 461 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0555 461 MobiDBLite consensus disorder prediction 69 89 - -
Cone1ag0555 461 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 1 48 - -
Cone1ag0555 461 SUPERFAMILY E2F-DP heterodimerization region 217 322 IPR037241 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 440 461 - -
Cone1ag0555 461 CDD E2F_DD 221 322 IPR032198 GO:0046983(InterPro)
Cone1ag0555 461 FunFam E2F transcription factor 1 134 207 - -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 1 15 - -
Cone1ag0555 461 Gene3D - 213 322 - -
Cone1ag0555 461 Pfam E2F transcription factor CC-MB domain 221 321 IPR032198 GO:0046983(InterPro)
Cone1ag0555 461 Coils Coil 218 259 - -
Cone1ag0555 461 Gene3D - 134 207 IPR036388 -
Cone1ag0555 461 MobiDBLite consensus disorder prediction 436 461 - -
Cone1ag0555 461 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0555 K06620 - - csv:101219318 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0130 Cone-Chr16:738356 Cone1ag0555 Cone-Chr1:5528938 5.82E-09 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone3ag0151 Cone-Chr3:841787 1.01E-175 dispersed
Cone1ag0555 Cone-Chr1:5528938 Cone10ag0135 Cone-Chr10:701793 9.76E-172 wgd
Cone1ag0555 Cone-Chr1:5528938 Cone5ag1327 Cone-Chr5:7825728 4.41E-305 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45443 PF00149 Metallophos 7.90E-36 CL0163 Cone TF