Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0567 ATGGAGAATTACTCTGAAAAACAAGAGGGCTCTTGCTATAACTTTTCAGTTGTGCTCGAATTATCTGCTTTCAACGATCTGGTTGGATTCAAAAGAGCTGTAGAGGAAGAGGGTCATGATATTGATGCGGCAATCTTGTGGTATGGGAGGAGAATTGGTTCGAAAAAGATGGGCTATGAAGTTAGAACACCTCTCATGATTGCAGCCATGTATGGAAGCAATGATGTACTAGTCTATATCCTTGAGACCGGTTGTGTTGATGTTAACAGGGCTTGTGGTTCAGATGGAGTCACAGCTCTTCATTGTGCTGTAGCTGGTGGTTCTTCTTCTTTAGCCCAGACCATCAAGTTCCTGCTCGATTCTTCAGCTGATGCTAACATCATGGACGCTAATGGAAACCGGGCAATTGACTTGATTGCTCCTTATTGCTTCCCCTGTAATTCAAGGAAGAAAATTTTGGAAGCTATGCTGAAAGGTAGTAGCCTTACTGATGATAGTCTGGGTTTATTCGAGCAGATGGATGATGAACCAAGAGAGATGTCCCCAACTCGGGCTGAGAAGAAAGAATATCCGGTCGATCTCTCCCTTCCAGATATTAAAAACGGGATATATAGCACAGATGAGTTTAGAATGTATACATTCAAGGTCAAACCTTGTTCAAGAGCATATTCCCATGACTGGACCGAGTGCCCTTTTGTTCACCCTGGTGAAAATGCTAGACGTAGAGACCCTAGAAAATACCATTACAGCTGTGTCCCTTGTCCGGAATTCAGAAAGGGGTCTTGTAGACAAGGAGATGCTTGTGAATATGCGCATGGTATTTTTGAGTGTTGGCTTCACCCTGCTCAATATAGGACCCGGCTTTGTAAGGAAGAAACAGGGTGTAATAGAAGAGTATGTTTCTTTGCCCACAAGCCAGAGGAGCTTCGCCCATTGTACGCCTCAACTGGGTCTGCTGTATCTCCTAGATCATACTCTGCCACAGCTTCATTAGACATGAGCTCGATTAGCCCTCTTGGGCTTGGGCCCCCTAATTTGATATTAACCCCGACCTCGTCCTCTCCCATGAGCCCATCTGGGGTTTCTTCCCCAATGGGCAGCTCAATATGGTCGAACCAACCAAACCTTACTTCCCCAACTGTGCAACTACCCAGCAGCAGATTGAAAGCTTCATTGAGTGCTAGGGACATGGATTTAGACCTTGAATTGCTCGAGATTGAAAGTAATCGTAGAAGACAGCAACGGGAGCTCTCTAGCCTCTCCTCTCAATCCGGTTGGAACAATGGCCTGTCCACTGCTTCAGGTTTTAATTCCCCAGGTGACATAAATGGGGAATTAAGTAGGCTTGGAAGGATCAAGCCGACTAATCTTGAAGGTATGTTCGGGTCTTTGGAGAACACAATTTTGTCACATAGCCCGAACACACATCTTCGCTCGAGCTACCCTACAAACAACTCATTCTCCTCTGCCAGGCCGTCGCAACCTTATGATGTTGATTCATACCGGACCAATGCAGCTGCAATTTTGAGCTCCAGATTGTCTGCCTTTTCAAAGCGTAGCCAGAGCTTTATAGAACGTGGGTCCATGAATCATTTTTCCGGGGTGTCTTCTTCTCCTTCTGCTGCTTCTCCTGCTGGTGTTGGTTCTATGCTTTCTGATTGGGGATCCCCAGATGGGAAAGTGGAATGGGGTATTCAAGGAGAGGAGCTGAATAAGTTGAGGAAATCTTCTTCCTTCGGGGTTAGAAATAGTGGTCGAAGTTTTTCAGGGACTGGACTCACCACCACCCAAGCATGTGAGAATGATGACCGGGACGTGTCTTGGGTTCAGCCTTTGGTGAAGGATGGTCCGGTTTTGAAACCTGGGCAGTTTGGTTTTGAAGAGGAGCAGCAACAGCTTTTTCATCTTGAAAATGGTAGTTCTGAGAATCTTCCGGCTTGGATGGAGCAAATATACATGGAACAAGAGCAATTGGTGGCATAG 1983 45.94 MENYSEKQEGSCYNFSVVLELSAFNDLVGFKRAVEEEGHDIDAAILWYGRRIGSKKMGYEVRTPLMIAAMYGSNDVLVYILETGCVDVNRACGSDGVTALHCAVAGGSSSLAQTIKFLLDSSADANIMDANGNRAIDLIAPYCFPCNSRKKILEAMLKGSSLTDDSLGLFEQMDDEPREMSPTRAEKKEYPVDLSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCRQGDACEYAHGIFECWLHPAQYRTRLCKEETGCNRRVCFFAHKPEELRPLYASTGSAVSPRSYSATASLDMSSISPLGLGPPNLILTPTSSSPMSPSGVSSPMGSSIWSNQPNLTSPTVQLPSSRLKASLSARDMDLDLELLEIESNRRRQQRELSSLSSQSGWNNGLSTASGFNSPGDINGELSRLGRIKPTNLEGMFGSLENTILSHSPNTHLRSSYPTNNSFSSARPSQPYDVDSYRTNAAAILSSRLSAFSKRSQSFIERGSMNHFSGVSSSPSAASPAGVGSMLSDWGSPDGKVEWGIQGEELNKLRKSSSFGVRNSGRSFSGTGLTTTQACENDDRDVSWVQPLVKDGPVLKPGQFGFEEEQQQLFHLENGSSENLPAWMEQIYMEQEQLVA 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5761316 5764480 - Conep01aG0059100.1 Cone1ag0567 431258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0567 660 MobiDBLite consensus disorder prediction 473 496 - -
Cone1ag0567 660 ProSiteProfiles Zinc finger C3H1-type profile. 253 275 IPR000571 GO:0046872(InterPro)
Cone1ag0567 660 Gene3D - 23 151 IPR036770 -
Cone1ag0567 660 PANTHER UNKEMPT FAMILY MEMBER 54 615 IPR045234 -
Cone1ag0567 660 MobiDBLite consensus disorder prediction 533 553 - -
Cone1ag0567 660 ProSiteProfiles Ankyrin repeat profile. 95 130 IPR002110 GO:0005515(InterPro)
Cone1ag0567 660 MobiDBLite consensus disorder prediction 410 442 - -
Cone1ag0567 660 Gene3D - 249 311 - -
Cone1ag0567 660 MobiDBLite consensus disorder prediction 350 383 - -
Cone1ag0567 660 MobiDBLite consensus disorder prediction 415 441 - -
Cone1ag0567 660 SMART ANK_2a 60 90 IPR002110 GO:0005515(InterPro)
Cone1ag0567 660 SMART ANK_2a 95 127 IPR002110 GO:0005515(InterPro)
Cone1ag0567 660 SMART c3hfinal6 283 306 IPR000571 GO:0046872(InterPro)
Cone1ag0567 660 SMART c3hfinal6 248 274 IPR000571 GO:0046872(InterPro)
Cone1ag0567 660 FunFam Zinc finger CCCH domain-containing protein 66 206 274 - -
Cone1ag0567 660 ProSiteProfiles Ankyrin repeat region circular profile. 95 129 - -
Cone1ag0567 660 Coils Coil 403 423 - -
Cone1ag0567 660 SUPERFAMILY Ankyrin repeat 23 141 IPR036770 -
Cone1ag0567 660 Pfam Ankyrin repeats (3 copies) 57 129 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0567 Cone-Chr1:5761316 Cone3ag0063 Cone-Chr3:379515 5.13E-129 dispersed
Cone1ag0567 Cone-Chr1:5761316 Cone1ag1210 Cone-Chr1:55944624 3.66E-196 wgd
Cone1ag0567 Cone-Chr1:5761316 Cone4ag1010 Cone-Chr4:8792079 4.79E-56 wgd
Cone1ag0567 Cone-Chr1:5761316 Cone5ag1074 Cone-Chr5:4765337 0 wgd
Cone1ag0567 Cone-Chr1:5761316 Cone5ag0196 Cone-Chr5:813615 6.22E-191 wgd
Cone1ag0567 Cone-Chr1:5761316 Cone7ag1137 Cone-Chr7:8577193 2.44E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45445 PF01926 MMR_HSR1 8.50E-09 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0567 - - - 0.0