Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0573 ATGGCGGTCTCATGGGAAGACAGCGTAACATACTCCATAAACACGGTCTACCTTCTCTTCTCAGCCTACCTCGTCTTCGTAATGCAACTAGGCTTCGCCATGCTCTGCGCCGGTTCAGTCCGAGCCAAGAACGCCATGAACATCATGCTCACTAACGTCGTCGACGCCGTCGTCGGAAGCATATCCTACTACCTCTTCGGCTTTGCTTTTGCCTTCGGCGACGGCTCCAACTCCAACCCGTTCATCGGAACAAATTTCTTCGCCCTCTACGACATTCCCAACTCCTCTTACGACTATACCTTCTTCCTCTACCAGTGGGCCTTCGCCATCGCCGTCGCTGGTATCACCGCCGGCTCAATCGCAGAGAGAACACAGTTCCCGGCGTACCTCGTTTTCTCATTTTTCCTTACCGGGTTCGTTTACCCGGTAGTGGCCCACTGGGTTTGGTCAACGAGTGGGTGGCTCAGTCCGAGTTCGACTGAGTTGTTATTTGGGTCGGGAGCGATTGATTTTGCCGGGAGTGGGGTTGTGCATTTAGTGGGCGGGATTGCTGGGCTTTGGGGCTCATTAATTGAAGGCCCAAGAGTGGGCCGGTTCGATGCCTTCGGAAAGCCCGTACCAATGAGAGGCCATAATGCTACCCTAGTGGTTCTGGGGACCTTCTTGCTTTGGTTCGGGTGGTTCGGGTTTAACCCCGGTTCGTTTGATAAGATTCTTGTCAGTTATCCGGACACTAACGATCAGGGGAATTGGACCGGAATAGGTAGGACTGCTGTAACAACAACTTTGGCGGGGTCCACCGCTGGGATTGTGACGTTGTTCGGTCGGAGACTAATAGTCGGCCATTGGGATGCACTGGATGTGTGTAACGGGGTGCTCGGCGGGTTTGTCGCGATCACATCGGGCTGTTCGGTGGTCGAGCCATGGGCTGCCATTGTGTGCGGGTTTGTAGCCGCTTGGGTTTTGATTGGGTTGAACATTGTGGCCCTAAAGTTGCATTTTGACGACCCATTAGAGGCGACCCAATTGCATGGTGGGTGTGGGATGTGGGGTTTGATATTCACTGGGCTTTTTGCTAAGGAGAAGTTTGTGATTCAGGTATACAATTCAGGAGACACAACGGTGACGAGGCCTTATGGGCTTTTGATGGGTGGGGGTTGGGGTTTGTTTGGAGCCCAACTAGTTGATGTTGTAGTCATTGTGGGCTGGGTTAGTTTAACAATGGGCCCACTCTTTCTAATTCTACAGAAGCTTGGAGTGTTGAGGATTTCAATTGACGATGAGGTTGCAGGGCTCGATATCTCCAGCCACGGTGGATTTGCTTACTCTCATTCTGAAAATAATCAACCTCGATTTTATGCAGATTACATGCGCTTGCAAGAACAGCAATAA 1392 51.65 MAVSWEDSVTYSINTVYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSISYYLFGFAFAFGDGSNSNPFIGTNFFALYDIPNSSYDYTFFLYQWAFAIAVAGITAGSIAERTQFPAYLVFSFFLTGFVYPVVAHWVWSTSGWLSPSSTELLFGSGAIDFAGSGVVHLVGGIAGLWGSLIEGPRVGRFDAFGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSFDKILVSYPDTNDQGNWTGIGRTAVTTTLAGSTAGIVTLFGRRLIVGHWDALDVCNGVLGGFVAITSGCSVVEPWAAIVCGFVAAWVLIGLNIVALKLHFDDPLEATQLHGGCGMWGLIFTGLFAKEKFVIQVYNSGDTTVTRPYGLLMGGGWGLFGAQLVDVVVIVGWVSLTMGPLFLILQKLGVLRISIDDEVAGLDISSHGGFAYSHSENNQPRFYADYMRLQEQQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5801865 5803456 - Conep01aG0059700.1 Cone1ag0573 431264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0573 463 NCBIfam ammonium transporter 14 442 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone1ag0573 463 SUPERFAMILY Ammonium transporter 11 423 - -
Cone1ag0573 463 PANTHER AMMONIUM TRANSPORTER 8 448 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cone1ag0573 463 FunFam Ammonium transporter 1 456 - -
Cone1ag0573 463 ProSitePatterns Ammonium transporters signature. 170 195 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone1ag0573 463 Gene3D Ammonium transporter AmtB like domains 3 458 IPR029020 -
Cone1ag0573 463 Pfam Ammonium Transporter Family 17 442 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0573 Cone-Chr1:5801865 Cone4ag0373 Cone-Chr4:1686595 7.57E-202 dispersed
Cone1ag0573 Cone-Chr1:5801865 Cone7ag0360 Cone-Chr7:1565355 6.81E-202 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0573 K03320 - vvi:132253941 801.971