Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag0580 | ATGCAATGGCGGGAAATGTTCATCATCTTCGTTATTTCCCGCGAAAAGAAGTGCCAGATTGACGAGATCGAGGCTGTCGATGAGAAGACTTGCAAGATAGGCGGATCCAACGGCGAGGCTGCTCCTCAGAAGCGGAAATTGAGATCTGATGCTTCTACGGTGCAGAAGAGTATCATTTCTACGCCCATGAAATGGAAATCGCCTCGCAGAAGCATCGATTCCGGCCCTGTCAATCATATGCAGATACTCGGAGCAAATGAAGCTAGTGTAGGAAGCATTGCATGCACTGGAAAATCATTATCTATGGAAAAAGTGAAACGGCTCTTATTGGATTGGGCAAGAGAAGCTGACGTACCAAATGTTTTGGCTGTAAATTGCACTTCTCTAACAAATACATCCGATATATTCACCAAGATGTTAGGTAAAATCCAACCAAGAAAGAAAATAAATGCCTCTTCCTCACCCTTACAACATCTTCAGAACTTCTATTCTCAAAGTCCAGTCATTTGGCGTGAAGATGATGTGAGACTTTTCTCTTTTCCTAGGCTAATAATTGCTGACGAATTGGTTTACTTAATTACTAAAGATCGAGGGGTGCTTCATGATCTTTTCATGCTTACGACTTTTCCGGTCTCCAGGTGTATTTTTATTGGTATTGCAAATTCCATTGACCTGGCCGATCGTTTTCTTCCAAGGCTTCAGTCATTAAATTGCAAACCTCTGGTTGTAACTTTTAGGGCCTACTCTAAGGATCAGATCCTCAAGATCCTTCAAGAAAGGCTAAAGCGGGTGCTTCCTTGCACTGTTTTTCATCCACAAACATTGGAACTTTGTGCCAGAAAAATTGCAGCTGTATCTGGAGATATGCGAAAAGCCCTTTGTGTTTGCAGAAGTGCTGTGGAATATCTAGAAGCTGAGCTCAGAGAAGTTAGTGGCAACTCAAATCTATCATCATCAGCAAAAGCATCCTCTGAGGAACAGAATGAGGAACAGAAAGCTTCTACTCCTGGTATTGCAGAGAAACAAGATATAGTGAGGATTGATCATATGGCGGTTGCATTGTCAAAGACATTTAAATCTCCAGTTGTGGACACAATCCAATCTCTTCCTCAGCATCAACAGATTATCCTTTGTTCGGCTGTGAAGCTTTTCCGTGGGAAGAAGAAAGATGCAAGTTTAGACGAGGTAAATAAATCATACAAGGAGGTCTGCAAATCCGCAAGAATCCCACCAGTTGGAGCATCTGAGCTTGCCAGTATGTACAGAGTTCTAAATGACCAGGGGCTTCTTAAACTGGGTCAATCCCGAGATGATAAACTGAAAAGAGTATCACTGAAAGTTGATGAAATCCGATATGACCTTTGCATTGCAGGGTATCCGTTTCTTCCGAAACTGCCTTCAGTAATTGCACTCAGAGCTTAG | 1422 | 42.41 | MQWREMFIIFVISREKKCQIDEIEAVDEKTCKIGGSNGEAAPQKRKLRSDASTVQKSIISTPMKWKSPRRSIDSGPVNHMQILGANEASVGSIACTGKSLSMEKVKRLLLDWAREADVPNVLAVNCTSLTNTSDIFTKMLGKIQPRKKINASSSPLQHLQNFYSQSPVIWREDDVRLFSFPRLIIADELVYLITKDRGVLHDLFMLTTFPVSRCIFIGIANSIDLADRFLPRLQSLNCKPLVVTFRAYSKDQILKILQERLKRVLPCTVFHPQTLELCARKIAAVSGDMRKALCVCRSAVEYLEAELREVSGNSNLSSSAKASSEEQNEEQKASTPGIAEKQDIVRIDHMAVALSKTFKSPVVDTIQSLPQHQQIILCSAVKLFRGKKKDASLDEVNKSYKEVCKSARIPPVGASELASMYRVLNDQGLLKLGQSRDDKLKRVSLKVDEIRYDLCIAGYPFLPKLPSVIALRA | 473 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 5826366 | 5830106 | - | Conep01aG0060400.1 | Cone1ag0580 | 431271 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag0580 | 473 | SMART | Cdc6_C_2 | 377 | 454 | IPR015163 | - | |
| Cone1ag0580 | 473 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 96 | 450 | IPR050311 | GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER) | |
| Cone1ag0580 | 473 | MobiDBLite | consensus disorder prediction | 314 | 338 | - | - | |
| Cone1ag0580 | 473 | Gene3D | - | 366 | 452 | IPR036388 | - | |
| Cone1ag0580 | 473 | Pfam | CDC6, C terminal winged helix domain | 364 | 449 | IPR015163 | - | |
| Cone1ag0580 | 473 | Pfam | Cdc6/ORC-like, ATPase lid domain | 248 | 306 | IPR054425 | - | |
| Cone1ag0580 | 473 | CDD | Cdc6_C | 370 | 449 | IPR015163 | - | |
| Cone1ag0580 | 473 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 97 | 309 | IPR027417 | - | |
| Cone1ag0580 | 473 | Gene3D | - | 238 | 365 | - | - | |
| Cone1ag0580 | 473 | Gene3D | - | 80 | 237 | IPR027417 | - | |
| Cone1ag0580 | 473 | MobiDBLite | consensus disorder prediction | 314 | 335 | - | - | |
| Cone1ag0580 | 473 | SUPERFAMILY | Winged helix DNA-binding domain | 362 | 449 | IPR036390 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1488 | Cone-Chr11:10537968 | Cone1ag0580 | Cone-Chr1:5826366 | 1.86E-21 | transposed | |
| Cone1ag0580 | Cone-Chr1:5826366 | Cone5ag1091 | Cone-Chr5:4850033 | 1.15E-234 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag0580 | K02213 | - | rcu:8283237 | 439.884 |