Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0610 ATGGCGGAGATTTGTTGTGGAATGGTGAGTGATAGTGAAAGTTCTCCGCCGTACGAACCTAGCTCACGAACGGCTAGGCGGCGGAGAATGGAGATCAGGAGGTTTAAGTTTGTGGCCGGGGTGGCACCGCCGCATACGGAGGAGAACGAGCAGAAACGCAGGAAGTTGGAGTTCTATGCGGCGGCGTTTCCCGTCAGTGACTGCAATAATTCAGTTCAGGACTCTGGTTCCGATGAAGAAAAACGTTTTGAGGTAAAGGTAGGATCGGACAGCTGTAAGGAGATACAAAATTTGTGTAGTCCTTCGAAGAGTGAAATTCCCAGCCCAGCAACGAGGGATCGGGAATCTTCCGGAGAGTATCCGAGATTCGGCGTGGCTTCATTATGCGGAAGGAGGAGAGATATGGAAGATGCCGTTGCTCTTCATCCTTCATTTTTCCGGTCAGATGATGAAGATACAGCTCAATTTCATTATTTTGCTGTTTACGACGGCCATGGATGCTCTCATGTGGCGACGAAGTGCAGAGAAAGACTGCACGAGATTGTGAAGGAAGAGATGGAGAGTAAAGAAGAGCCGAGTGGTGGCGGAGAGTGGAAGAGCGTAATGGAGCGAAGCTTTTGCCGGATGGACAGAGAGGTTATTGTGGCGAATGAGGGAGCAACAGCTGTAGGTAACTGCAGATGTGAGCTTCAGTCGCCGGAGTGCGACGCCGTTGGATCTACTGCAGTCGTTGCAGTCGTATCTCCTGATAAAATAATTGTCGCTAATTGCGGTGATTCTAGAGCAGTTCTCTGTCGAAATGGAAAGGCTATTCCACTGTCGTCTGATCACAAGCCGGATCGCCCGGATGAGCTAATTCGGATCGAATCTGTGGGTGGGCGGGTCATATATTGGGAGGGTGCTCGGGTTCTCGGTGTCCTCGCCATGTCAAGAGCTATAGGTGATAATTATCTGAAGCCATACGTGAGCTGCGAGCCGGAGATCACGATCACAGATCGGACGGCAGAGGATGAGTGTTTGGTAATAGCAAGTGATGGGCTTTGGGATGTGGTATCCAATGAGACCGCATGTGGGGTGGCCCGAATGTGCCTGAGGGGAAGGGGCAACTCCGAGGCATTATCCGCTGCGGGGAGTGATGTTTCCGGGATAGAGATATCCAATAAGGCGTGTAACAACGCATCCATGTTGCTGACGAAACTGGCTTTGGCTAGGCACAGTTCGGACAACGTTAGCGTGGTTGTCGTAGACCTTAGGATGGGTAATGTGGCCTAA 1272 51.18 MAEICCGMVSDSESSPPYEPSSRTARRRRMEIRRFKFVAGVAPPHTEENEQKRRKLEFYAAAFPVSDCNNSVQDSGSDEEKRFEVKVGSDSCKEIQNLCSPSKSEIPSPATRDRESSGEYPRFGVASLCGRRRDMEDAVALHPSFFRSDDEDTAQFHYFAVYDGHGCSHVATKCRERLHEIVKEEMESKEEPSGGGEWKSVMERSFCRMDREVIVANEGATAVGNCRCELQSPECDAVGSTAVVAVVSPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELIRIESVGGRVIYWEGARVLGVLAMSRAIGDNYLKPYVSCEPEITITDRTAEDECLVIASDGLWDVVSNETACGVARMCLRGRGNSEALSAAGSDVSGIEISNKACNNASMLLTKLALARHSSDNVSVVVVDLRMGNVA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5960182 5962253 - Conep01aG0063600.1 Cone1ag0610 431301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0610 423 Pfam Protein phosphatase 2C 123 389 IPR001932 -
Cone1ag0610 423 PANTHER PROTEIN PHOSPHATASE 102 416 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone1ag0610 423 MobiDBLite consensus disorder prediction 1 26 - -
Cone1ag0610 423 ProSitePatterns PPM-type phosphatase domain signature. 158 166 IPR000222 GO:0043169(InterPro)
Cone1ag0610 423 SUPERFAMILY PP2C-like 119 418 IPR036457 -
Cone1ag0610 423 CDD PP2Cc 122 366 IPR001932 -
Cone1ag0610 423 Gene3D - 111 420 IPR036457 -
Cone1ag0610 423 SMART PP2C_4 112 415 IPR001932 -
Cone1ag0610 423 FunFam Protein phosphatase 2C 37 117 422 - -
Cone1ag0610 423 ProSiteProfiles PPM-type phosphatase domain profile. 122 417 IPR001932 -
Cone1ag0610 423 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0610 Cone-Chr1:5960182 Cone5ag0672 Cone-Chr5:2877495 1.58E-80 dispersed
Cone1ag0610 Cone-Chr1:5960182 Cone1ag1257 Cone-Chr1:56127181 6.96E-145 wgd
Cone1ag0610 Cone-Chr1:5960182 Cone5ag1121 Cone-Chr5:4987859 1.27E-277 wgd
Cone1ag0610 Cone-Chr1:5960182 Cone5ag0241 Cone-Chr5:1020716 9.11E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0610 K14497 - vvi:100255251 489.189