Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone1ag0620 | ATGGGTGAGGAGGTGAGGATGACCGAGTATGAAGGATGCGATGATGGAAGCGGTGGAGATGAAGACCGAGTTCTCGAATGGGAAGCGGGTCTACCCGAGTCGGACGATCTCACCCCTCTAACTAAGCACTTGATTCCACTGGAGCTCGCATCGGCGTTTAGCATCTCGCTGGAACCATGCCGGACGATCTTAGACGTCAATCAAGCCTCACAGACAACGCTCTCAAATCTCCGTGGAGGACAATCGCAAGGCTTCTCCTCCTCTAACAATTTCAAATCCTTCGAAGAACGGGGTCGGGTCGACGCGGACCCGATGGTCGTAGGATGGGACGAAACCACCACCAATCCAGACTGCTCAGCCCTCGATCCGAGAAAATTGAGGAAAGTAGACACCACGGAAGAAGCCGATTCAGCTCTCAGAATCGAGAATTCAACCGAAGTAGACCCCTCGGCTCGAACCTTGAAGCGACCTAGGCTCGTGTGGACCCCACAATTACACAAGCGGTTCGTCGATGTAGTAGCTCATCTAGATATCAAAAACGCAGTGCCTAAAACAATCATGCAATTGATGAACGTAGAGGGATTAACCCGAGAAAACGTAGCGAGCCATCTTCAAAAGTACCGCCTTTATCTGAAACGAATGCAAGGATTCTCAAACGAGGGGCCCTCTGCATCGGACCAGCTATTCGCGTCCACTCCGGTCCCACAGAGCCTGCCCGAATCGAGCTCGAATGGACAAGGAACTGGGCAATTGCCAGTTTCGATTCCGATGCCCTATGGGCTGCCACATACGGTGGCTATGCCGTTACTTGGCATGGCGGCAGCATCTCACGGTCATATGGTGGGTCTCTTGGGTAATGCGGGCGGGTACCCATACAGTATGATGCAGCCGCAACAGCAAGATTGGTCGGGGAATAAGTATGGATCCATGGTTTCATATCCTCATCACGTTGGTTATAAAAATTCTAATGATAAATGA | 978 | 51.53 | MGEEVRMTEYEGCDDGSGGDEDRVLEWEAGLPESDDLTPLTKHLIPLELASAFSISLEPCRTILDVNQASQTTLSNLRGGQSQGFSSSNNFKSFEERGRVDADPMVVGWDETTTNPDCSALDPRKLRKVDTTEEADSALRIENSTEVDPSARTLKRPRLVWTPQLHKRFVDVVAHLDIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGFSNEGPSASDQLFASTPVPQSLPESSSNGQGTGQLPVSIPMPYGLPHTVAMPLLGMAAASHGHMVGLLGNAGGYPYSMMQPQQQDWSGNKYGSMVSYPHHVGYKNSNDK | 325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6042713 | 6046145 | - | Conep01aG0064600.1 | Cone1ag0620 | 431311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone1ag0620 | 325 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cone1ag0620 | 325 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 157 | 209 | IPR006447 | GO:0003677(InterPro) | |
| Cone1ag0620 | 325 | FunFam | Two-component response regulator | 152 | 215 | - | - | |
| Cone1ag0620 | 325 | Pfam | Myb-like DNA-binding domain | 159 | 208 | IPR001005 | - | |
| Cone1ag0620 | 325 | SUPERFAMILY | Homeodomain-like | 153 | 213 | IPR009057 | - | |
| Cone1ag0620 | 325 | Gene3D | - | 153 | 215 | - | - | |
| Cone1ag0620 | 325 | MobiDBLite | consensus disorder prediction | 221 | 251 | - | - | |
| Cone1ag0620 | 325 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 18 | 300 | IPR044841 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone1ag0620 | Cone-Chr1:6042713 | Cone3ag0500 | Cone-Chr3:2465908 | 6.27E-40 | dispersed | |
| Cone1ag0620 | Cone-Chr1:6042713 | Cone5ag1126 | Cone-Chr5:5011016 | 2.93E-208 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45449 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone1ag0620 | - | - | - | 0.0 |