Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0630 ATGGATCAATATTATGGAGGCTACCCAGATCATATTAATGGTTTCAAAGTCAACGATCCGACACTCTTGCTTAATCCCGAGGTGTTCTTAAATCTTCCTGATGATCAGACCTACTTGGCCGGATCGAATCCCTATGGTTTCGGGTTTGACCAAAAATCTCCCGATGTCACTTTCATTGAAAACTCCCTCTCTTTAGACGATCTAGATCCATCTAGCTTTGCTCTGCCCAAAACTGTGAGCCCACCTGGGCCCGTCTCCACCTTACCTTCTGGTTTGAGTCCAGGCGCTGGCTCAACGTCCTCAGACGACAGTGAATTCTCGGAAACTGTTCTCAAGTACATGACCCAAATCCTCATGGAAGAGAACATGGAAGAAAGGCCATCCATGTTTTTCGACCCTCTGGGTCTTAAAGATACCGAGAAGTCATTCTATGATGTTCTCGGAACAAACTACCTGTCACAAAATCCTCCACCTCTTTTTTCCAAAAGCCCGGAAGATACTATTTCTCCTGGTAGTAGTAGTAGTAGTGATCATAATGGTAGCAGCAGTATTACTACTTCTAGTTCTAGTAACTCTACACAGATTTTCCAGCCTGATTTGCAGCCCATTTCCCAGTTTTCTATCTACAATCAAAACAGCCCGACTAGTTCTGATGGTGATGATCTGGTCTCTGAGCTGTTATCTCGGAGTATTTTTGGTGAAAGTGAATCTGCCTTGCAGTTCAAGAAAGGGTTAGAAGAGGCCAGTAAGTTCCTTCCGGGAAATGGTCACCTAAATCTCGATCTACAAAGAAGTGGGCTCAAGTGGGTAGAGAACAACAATGGAGAGGAGAAGGAGAGGGAGAGGGATATTTCGCCGAACGGATCTGCAAGAGGAAGAAAAAGAGAAGAAATTGATTTAGATTCACAAGAAGAGAGGAATAATAAACAATCAGCTGTTCACAAGGACGATGAGGACATATCAGAATTGTTCGACCATGTGTTGCTCTTCAAGAAAGAACAGCACGAAATCTGTTGTGAAACCGAAGCTCCTCAACCGTCCGATCAGTCTCAAGGATCATCATCATCCAATGGTGGAAAAGCAAAAGGGAAAAAACGAGGGAAGCGAAAGGAAACTGTGGATTTAAGGCCCCTTCTGATTCTATGCGCACAAGCTGTTTCAACCGACGATAGAAGAACTGCTAACGAGCTCTTGAAGCAAATAAGGCATAATTCGAGCCCATTCGGAGACGGGTCCCAGAGACTGGCCCATTATTTCGCCAACGCCCTTGAGGCCCGCATGGCCGGAACCGGTACTGGAACCAAACTCTTTTTCTCTTCCCTGACTAACAAAAACATATCAGCTGCTGACATATTAAGATCTTGTCAAGTCCATCTCTCGGCCTGTCCTTTAAAGAAGATCTCGATTTTCTTCGCTTGCAAAATGATCCTGAAAGCCGCCCAGAAAGACAAAACCCTTCACATCGTAGATTTCGGAATCAGTTATGGATTCCAATGGCCAATACTGATCCAGAAATTGTCACAATTGCCCAGTGGGCCCCCTAAGCTCCGAATCACGGGAATTGAGTTTCCTCTTCCTGGGTTCCGTCCTTCGGAAAGAATTGAGGAAACGGGTCGTCGGTTGGAAAAGTACTGTGCACGGTTTAATGTTCCCTTCGAATATAATGCGATTGCATCGGCAAATTGGGAAAACATTAAAATTGCGGAATTAAAACTCGATAAAGATGAAGTTCTTGCCGTAAACACTTTTTACCGGTTCAAGAACCTACTTGACGAGACAGTTGAAGAGACTAGTCCAAGAAACTCGGTTCTGGAATTGATCAGGAAGATGAACCCAAACATCTTCATTCAATCTATTTGTAACGGATCGTACAATGCCCCGTTCTTTGTGACAAGATTCCGAGAAGCACTGTTCCATTTCTCCGCTTTGTACGATATGTTCGATACAAATATTACTCGGGAAAGTGAAGAGAGGATGATGTTTGAGAGAGAAATTTATGGGCGAGAGGCAATGAATGTGATAGCGTGTGAAGGGCCGGAAAGGGTTGAACGGCCCGAGAATTATAAGCAATGGCGAGTCCGGTGCAATCGGGCTGGGTTCAAGTCGATGCCTTTGGACCGAGAGCTTATGGATATATTTAGGCAGAAGTTGAAGTCATGGTATCATAAGGATTTTGTGCTTGATGAAGATAGTAATTGGATGCTTCACGGATGGAAAGGCCGGATAACTTATGCGTCTACCTGCTGGGTCCCGGCATAG 2259 44.67 MDQYYGGYPDHINGFKVNDPTLLLNPEVFLNLPDDQTYLAGSNPYGFGFDQKSPDVTFIENSLSLDDLDPSSFALPKTVSPPGPVSTLPSGLSPGAGSTSSDDSEFSETVLKYMTQILMEENMEERPSMFFDPLGLKDTEKSFYDVLGTNYLSQNPPPLFSKSPEDTISPGSSSSSDHNGSSSITTSSSSNSTQIFQPDLQPISQFSIYNQNSPTSSDGDDLVSELLSRSIFGESESALQFKKGLEEASKFLPGNGHLNLDLQRSGLKWVENNNGEEKERERDISPNGSARGRKREEIDLDSQEERNNKQSAVHKDDEDISELFDHVLLFKKEQHEICCETEAPQPSDQSQGSSSSNGGKAKGKKRGKRKETVDLRPLLILCAQAVSTDDRRTANELLKQIRHNSSPFGDGSQRLAHYFANALEARMAGTGTGTKLFFSSLTNKNISAADILRSCQVHLSACPLKKISIFFACKMILKAAQKDKTLHIVDFGISYGFQWPILIQKLSQLPSGPPKLRITGIEFPLPGFRPSERIEETGRRLEKYCARFNVPFEYNAIASANWENIKIAELKLDKDEVLAVNTFYRFKNLLDETVEETSPRNSVLELIRKMNPNIFIQSICNGSYNAPFFVTRFREALFHFSALYDMFDTNITRESEERMMFEREIYGREAMNVIACEGPERVERPENYKQWRVRCNRAGFKSMPLDRELMDIFRQKLKSWYHKDFVLDEDSNWMLHGWKGRITYASTCWVPA 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6099453 6101711 - Conep01aG0065600.1 Cone1ag0630 431321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0630 752 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 344 749 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone1ag0630 752 MobiDBLite consensus disorder prediction 342 370 - -
Cone1ag0630 752 MobiDBLite consensus disorder prediction 91 106 - -
Cone1ag0630 752 MobiDBLite consensus disorder prediction 155 195 - -
Cone1ag0630 752 ProSiteProfiles GRAS family profile. 366 750 IPR005202 -
Cone1ag0630 752 MobiDBLite consensus disorder prediction 343 360 - -
Cone1ag0630 752 MobiDBLite consensus disorder prediction 74 106 - -
Cone1ag0630 752 Pfam GRAS domain family 376 749 IPR005202 -
Cone1ag0630 752 MobiDBLite consensus disorder prediction 271 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0315 Cone-Chr10:1500281 Cone1ag0630 Cone-Chr1:6099453 1.49E-197 dispersed
Cone13ag1347 Cone-Chr13:9890450 Cone1ag0630 Cone-Chr1:6099453 1.66E-30 dispersed
Cone1ag0630 Cone-Chr1:6099453 Cone5ag1134 Cone-Chr5:5088153 0 dispersed
Cone1ag0629 Cone-Chr1:6095291 Cone1ag0630 Cone-Chr1:6099453 5.28E-154 tandem
Cone1ag0630 Cone-Chr1:6099453 Cone1ag0631 Cone-Chr1:6106925 1.33E-191 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45451 PF01061 ABC2_membrane 3.70E-33 CL0181 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0630 K27753 - csv:101203568 742.265