Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0643 ATGGGTAACGGTGTCGGAAAGCTGAGTGCTTGTTTCACCGGAGTCGGTGATGGTCGCCGGAGGCCAGACATATCTGTTCTCATATCGGATCCTCTCGACGAGGGATTGGGCCACTCCTTCTGCTACGTACGACCCGACCCGTCTCGTATCTCATCATCAAAGGTCCATTCAGAACAAACGACGACGTTTAGAGCAATCTCAGGCGCTTCAATCAGTGCGAACACTTCTACTCCTCTCTCTACGTCGCTAATCGATCTCTATTCCTATAACAGCATCGACCGAGCTGCCGCTTTTGAAAGCTCCATCTCCTTCGCTTCGATTCCTCTCCAACCGATTCCACGAAATTTGATCAACTCCGGTCCGATTTCTGGAAATTACAATGGCTTTCCGAGCTCTGGCCCGCTGGAAAGGGGTTTTGTATCCGGCCCGATCGAGCGCGGATTCATGTCCGGCCCGTTGGACCGTAGACTTTTCTCCGGCCCGATGGAAAAGGGCTCCTCCGATGAGTTTCCGAGGAGCTTCTCTCCGGGCCGTTTTGATTTCAGATCCAGATCGAGAAAAGGGCGGCTAATGCGGATCCTTCGGCGAGCGATATCGAAGACGATATATCGTGGAGGTCAAAACTCCATCGTCACGCCGATCAAAGGGGTTAAAGAACCCGCCTGGATTATCGGAACCGATAAGCACAACGAGAATATGACGATAAGTAGCGTGAATTTGAGCAGCGATGGTAGTTTGGAAGATGATGATTCCATGGAAAGCCAGAATCTACAGTGGGCGCAGGGGAAAGCAGGGGAGGATCGAGTTCATATCGTCGTTTCGGAAGAACACGGGTGGGTCTTCGTCGGAATCTATGATGGATTCAACGGCCCAGATGCTCCGGATTTTCTTCTCTCTAATTTATATTCATCTGTTCATAAAGAGCTTAAAGGTTTATTATGGGATGAGAAGTTCGAATCAGCCATATCTACCACTCCTGTTCGGTCGGAAAATTCTTTCTCTGGAACTAGAGAATTGTTACAACAGTTTAGTGACAGTGATTTTCCAAGGAATCATATCTTTGATGATTGTTCTCACTGTTTTGATCAAGAGAATCATCCTTGTGCAAGTGGGGATGGGAATTTCGACTCCAATTCGAGGATTAGAAAAGGAAGAAATTCTAAAACGAAATATCCAGGAGCTGCCAAGAAGTGGGAAGATAATCAAAGAAGGTGGAAATGCGAGTGGGACCGGGAAAGGGTCGAACTGGACCAGAGGTTAAAGGAGAAGTTGAACCGGTCCGGGTCGGATAAATCAATCAATCACAATGATGTATTGAAAGCTCTGTCTCAAGGTTTGGTGAAAGCAGAGGAAGCCTATTTGGAAATTGCAGACAAGATGGTTCTAGAAAATCCTGAACTAGCTTTAATGGGTTCTTGTGTGCTTGTAATGCTTCTGAAGGGAGAAGATGTTTATGTGATGAATGTGGGTGATAGTCGAGTGGTTTTGGCTCAAAAGGCTGAGCCCGATTATTGGGTCGGAAAGGTTCGACAGGACCTAGAGAGGATTAATGAAGAAACAATGCATGATCTTGAGGGTTTAGATAGTGATGATGCTCCTTATTCTATTCCTAACTTGAATGCTGTTCAGCTTTCAATGGATCACAGCACAAAAGTGGAAGAGGAAGTTCAGAGGATTAAAAATGAACACCAGGACGATTCATTAGCCATAATGAATGACCGTGTGAAAGGTTCATTGATGGTGACTCGAGCCTTTGGAGCCGGTTTTTTAAAACAGCCTAAGTGGAACAATGCACTTCTAGAGACGTTCCAAATCGACTACGTAGGAAATTCCCCATACATCACTTGTTCCCCATCTCTGAAACATCACAGATTAGGGCCGAAAGACCGGTTCTTGATCTTATCGTCAGATGGGCTTTACCAATACTTCACAAATGAAGAAGCTGTTTCTGAAGTCGAGCTTTTCATCACACTACAGCCCGAAGGCGATCCAGCGCAACATCTCGTTCAAGAAGTTCTCTTCAGAGCAGCCAGGAAAGCTGGTATGGACTTCCACGAGTTGCTTGACATACCACAAGGCGATAGAAGAAGGCAGTACCATGACGATGTTTCGATTATCAATCAGCTTTGTAAGATACCCAAACAAGCCTTAGGGGAAGAAGTATGTTTGATTGGGCTTGAAAGAGAAATTGTGCGGTTTATGATTTGGGTGATGAGGGAATGTAAGAAGTCATAA 2235 45.86 MGNGVGKLSACFTGVGDGRRRPDISVLISDPLDEGLGHSFCYVRPDPSRISSSKVHSEQTTTFRAISGASISANTSTPLSTSLIDLYSYNSIDRAAAFESSISFASIPLQPIPRNLINSGPISGNYNGFPSSGPLERGFVSGPIERGFMSGPLDRRLFSGPMEKGSSDEFPRSFSPGRFDFRSRSRKGRLMRILRRAISKTIYRGGQNSIVTPIKGVKEPAWIIGTDKHNENMTISSVNLSSDGSLEDDDSMESQNLQWAQGKAGEDRVHIVVSEEHGWVFVGIYDGFNGPDAPDFLLSNLYSSVHKELKGLLWDEKFESAISTTPVRSENSFSGTRELLQQFSDSDFPRNHIFDDCSHCFDQENHPCASGDGNFDSNSRIRKGRNSKTKYPGAAKKWEDNQRRWKCEWDRERVELDQRLKEKLNRSGSDKSINHNDVLKALSQGLVKAEEAYLEIADKMVLENPELALMGSCVLVMLLKGEDVYVMNVGDSRVVLAQKAEPDYWVGKVRQDLERINEETMHDLEGLDSDDAPYSIPNLNAVQLSMDHSTKVEEEVQRIKNEHQDDSLAIMNDRVKGSLMVTRAFGAGFLKQPKWNNALLETFQIDYVGNSPYITCSPSLKHHRLGPKDRFLILSSDGLYQYFTNEEAVSEVELFITLQPEGDPAQHLVQEVLFRAARKAGMDFHELLDIPQGDRRRQYHDDVSIINQLCKIPKQALGEEVCLIGLEREIVRFMIWVMRECKKS 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6164102 6166961 + Conep01aG0067100.1 Cone1ag0643 431334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0643 744 Gene3D - 229 711 IPR036457 -
Cone1ag0643 744 PANTHER PROTEIN PHOSPHATASE 2C 243 705 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone1ag0643 744 CDD PP2Cc 434 683 IPR001932 -
Cone1ag0643 744 ProSiteProfiles PPM-type phosphatase domain profile. 249 710 IPR001932 -
Cone1ag0643 744 SUPERFAMILY PP2C-like 263 706 IPR036457 -
Cone1ag0643 744 Pfam Protein phosphatase 2C 420 501 IPR001932 -
Cone1ag0643 744 Pfam Protein phosphatase 2C 541 660 IPR001932 -
Cone1ag0643 744 SMART PP2C_4 250 708 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0643 Cone-Chr1:6164102 Cone8ag0618 Cone-Chr8:6075605 6.09E-140 dispersed
Cone1ag0643 Cone-Chr1:6164102 Cone3ag0339 Cone-Chr3:1717551 1.83E-217 wgd
Cone1ag0643 Cone-Chr1:6164102 Cone5ag1149 Cone-Chr5:5179324 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0643 - - - 0.0