Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0645 ATGGCAGAAGCTGATGATATTCAGCCACTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCAAGAGCTGTTTTCCCCAGCATTGTGGGTCGCCCACGTCACACGGGGGTAATGGTTGGCATGGGTCAGAAAGATGCATATGTCGGTGATGAAGCTCAGTCCAAGCGTGGTATATTGACTTTGAAGTACCCCATTGAGCATGGAATTGTGAGCAATTGGGATGACATGGAGAAAATCTGGCATCACACCTTCTACAATGAACTCCGTGTGTCCCCCGAAGAACACCCTGTTCTACTCACTGAAGCACCTCTTAACCCAAAGGCTAACCGTGAAAAGATGACCCAGATCATGTTTGAGACTTTCAACACTCCTGCTATGTACGTTGCCATCCAGGCTGTTCTTTCCCTCTACGCCAGTGGACGCACAACTGGTATTGTTTTGGACTCAGGAGATGGTGTCAGCCACACTGTCCCCATTTATGAGGGGTATGCCCTCCCCCATGCTATACTTCGGCTTGACCTTGCAGGCCGTGACCTCACCGATGCCCTTATGAAAATCCTGACCGAGCGTGGCTATTCCTTTACCACCACTGCTGAGCGTGAAATTGTAAGAGACATGAAGGAGAAGCTTGCATATATCGCTCTTGATTATGAGCAAGAACTTGAAACTTCTAAGACTAGCTCTGCTGTTGAGAAAAGCTATGAATTGCCCGATGGGCAGGTAATTACTATTGGTGCTGAGCGATTCCGTTGTCCGGAAGTTCTTTTCCAGCCATCCATGATCGGAATGGAAGCTGCTGGTATTCATGAAACGACTTACAATTCTATCATGAAGTGCGATGTTGATATTAGGAAGGATTTGTATGGAAACATTGTTCTTAGTGGTGGATCTACCATGTTCACGGGCATTGGTGACAGAATGAGCAAGGAAATTACTGCTTTGGCCCCTAGCAGCATGAAAATTAAGGTGGTGGCCCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGGTCTATCTTGGCATCTCTCAGCACTTTCCAGCAGATGTGGATTGCGAAAGCAGAGTATGATGAGTCAGGTCCATCAATTGTGCATAGGAAATGCTTTTGA 1134 47.27 MAEADDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVSPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6178565 6180234 - Conep01aG0067300.1 Cone1ag0645 431336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0645 377 FunFam Actin, muscle 182 273 - -
Cone1ag0645 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cone1ag0645 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cone1ag0645 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cone1ag0645 377 SUPERFAMILY Actin-like ATPase domain 5 155 IPR043129 -
Cone1ag0645 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cone1ag0645 377 PRINTS Actin signature 51 62 IPR004000 -
Cone1ag0645 377 PRINTS Actin signature 238 254 IPR004000 -
Cone1ag0645 377 PRINTS Actin signature 63 85 IPR004000 -
Cone1ag0645 377 PRINTS Actin signature 142 161 IPR004000 -
Cone1ag0645 377 PRINTS Actin signature 28 37 IPR004000 -
Cone1ag0645 377 PRINTS Actin signature 117 130 IPR004000 -
Cone1ag0645 377 FunFam Actin, alpha skeletal muscle 255 329 - -
Cone1ag0645 377 FunFam Actin, alpha skeletal muscle 330 377 - -
Cone1ag0645 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cone1ag0645 377 SMART actin_3 7 377 IPR004000 -
Cone1ag0645 377 Gene3D - 140 340 - -
Cone1ag0645 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cone1ag0645 377 Pfam Actin 5 377 IPR004000 -
Cone1ag0645 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Cone1ag0645 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Cone1ag0645 377 Gene3D - 10 371 - -
Cone1ag0645 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0078 Cone-Chr10:447368 Cone1ag0645 Cone-Chr1:6178565 3.18E-37 dispersed
Cone13ag0532 Cone-Chr13:5595558 Cone1ag0645 Cone-Chr1:6178565 3.55E-275 dispersed
Cone1ag0645 Cone-Chr1:6178565 Cone3ag0092 Cone-Chr3:533119 1.19E-273 dispersed
Cone1ag0645 Cone-Chr1:6178565 Cone1ag1283 Cone-Chr1:56236946 1.55E-269 wgd
Cone1ag0645 Cone-Chr1:6178565 Cone10ag0307 Cone-Chr10:1459597 8.00E-272 wgd
Cone1ag0645 Cone-Chr1:6178565 Cone3ag0336 Cone-Chr3:1708645 8.00E-272 wgd
Cone1ag0645 Cone-Chr1:6178565 Cone5ag1152 Cone-Chr5:5192143 6.86E-174 wgd
Cone1ag0645 Cone-Chr1:6178565 Cone5ag0269 Cone-Chr5:1138546 4.43E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0645 K10355 - mdm:103418811 748.814