Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0649 ATGGTTTATTCATCTCTTCCAGCCTATTTAGATCCTCCCAATTGGCAACAACAGCAAGCAGCCAGTGAACAACCAAGGGTTAATGAAAATTCGCACCAACTTCTGCATCCAGCGCCACAGCTGCCGCCACCAGGACCACCTCATGGTGGCTCAGGGTCGATCAGGCCAGGCTCTATGGCCTATCAAGCCCGGTTAGCCATGTTACCTCAACCGGTGGCAGCTTTGAAGTGTCCAAGGTGTGAATCTACTAATACTAAGTTCTGTTACTTCAATAACTATAACCTTGCACAACCTCGACACTTCTGCAAAACATGTCGCCGTTACTGGACTCAAGGTGGTGCCCTACGGAATGTTCCAGTGGGTGGAGGTTGTCGTAGAAACAAGAAAAACAGGAGCCGTACTCGGCCCAAATCTCCGGCTCAGAGGCAGGTGGGTAATTCAGGATCGGCTCGCTCAAGTCCGCCAGGCACTAATTGCAACAGCATAGATCATGAGATGATTGGAAATCCTTTGCCTCCACAAATACCTCCTCAGTTACCTTTCATGGGGTCTTTACAAAATTTTACAAGGTATCATGGAGTGGGGAGTAGTCATTCTCCTAACATTGGGTTAAACTTTAGTGTTCATGATCAAAATATTAATACAAAAGGTGAAGATCATGTTGTAGGGTTTCAAATTGGAAGCAATTCAAGTGGTACTGGTGGTAGATCCGTTTTACAACAAAACATACCTTTCTTAGGCGGGTTATTAGACTCATCAACTGGCCTCAATTACCCATTATTTCAAAGTGATCATCAGAGTGCTATTCATGATGGGTCGTCTGGTGGTATGAACATGGAATCAAATTCTAGGGTTTTTCAGTTGCCTCCAATTAAAATTGAAGAAAACAAAGGCCTGAACCTGACAATTCCAACATCCATGGATGTCTCAGAAAACAATCAGTTGCTTTGGGGTGGAAATTCTTGGACAGAATTAACAGGTCTCAGCTCTTCTTCAGCTACAAACCTCTTGTAA 1014 44.38 MVYSSLPAYLDPPNWQQQQAASEQPRVNENSHQLLHPAPQLPPPGPPHGGSGSIRPGSMAYQARLAMLPQPVAALKCPRCESTNTKFCYFNNYNLAQPRHFCKTCRRYWTQGGALRNVPVGGGCRRNKKNRSRTRPKSPAQRQVGNSGSARSSPPGTNCNSIDHEMIGNPLPPQIPPQLPFMGSLQNFTRYHGVGSSHSPNIGLNFSVHDQNINTKGEDHVVGFQIGSNSSGTGGRSVLQQNIPFLGGLLDSSTGLNYPLFQSDHQSAIHDGSSGGMNMESNSRVFQLPPIKIEENKGLNLTIPTSMDVSENNQLLWGGNSWTELTGLSSSSATNLL 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6195157 6196477 - Conep01aG0067700.1 Cone1ag0649 431340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0649 337 MobiDBLite consensus disorder prediction 137 164 - -
Cone1ag0649 337 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 70 189 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0649 337 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag0649 337 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag0649 337 MobiDBLite consensus disorder prediction 116 171 - -
Cone1ag0649 337 MobiDBLite consensus disorder prediction 13 35 - -
Cone1ag0649 337 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone1ag0649 337 MobiDBLite consensus disorder prediction 13 57 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0649 Cone-Chr1:6195157 Cone1ag0700 Cone-Chr1:6521195 1.09E-31 dispersed
Cone1ag0649 Cone-Chr1:6195157 Cone1ag1284 Cone-Chr1:56242528 2.74E-61 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone10ag0305 Cone-Chr10:1446767 4.44E-49 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone13ag1337 Cone-Chr13:9841457 7.80E-61 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone19ag1320 Cone-Chr19:8863235 7.19E-57 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone3ag0333 Cone-Chr3:1692917 6.21E-58 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone5ag1158 Cone-Chr5:5209015 4.61E-209 wgd
Cone1ag0649 Cone-Chr1:6195157 Cone5ag0270 Cone-Chr5:1144528 2.65E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45453 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0649 - - - 0.0