Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0665 ATGCCAATTTCCAACATTGCCCTTGGAAATGCAGCTGAATTCGGCCACCCTGACGCTCTAAGAGCCGGCCTGGCTGAGTTTATCTCGGTCCTCATTTTCGTTTTTGCCGGTGAAGGTTCTGGCATGGCCTTCAGCTTTTTGACCAGTGATGGAGCAACTACACCGGCAGGGCTGGTAGCCGCCGCTCTAGCCCATGCATTTGCACTATTTGTAGCGGTTTCCGTCGGTGCCAACATTTCAGGAGGACATGTCAACCCAGCAGTGACATTTGGAGCTTTCATCGGAGGACACATCACCTTTATTAGGACCATTGTCTACTGGATTGCCCAGTTGCTTGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTCGCAACTGGTGGTTTGACAACATCTGCCTTTGCTCTATCAAGTGGAGTAGGAGTATGGAACGCAGTGGTACTCGAAATTGTGATGACATTCGGTTTGGTCTACACTGTCTACGCAACGGCAGTGGATCCCAAGAAGGGAAACATTGGGATTATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATTCTTGTCGGCGGTGCCTTCGATGGTGCATCAATGAACCCGGCCGTGTCTTTCGGCCCAGCTGTTGTCAGCTGGTCCTGGGACAACCACTGGGTCTACTGGCTTGGTCCATTCATTGGCTCAGCCATTGCAGCCATCGTGTACGAGGTCTTGTTCATTGCCCCGAGCACTCACGAGCAACTCCCTACTACTGAGTATTGA 759 51.12 MPISNIALGNAAEFGHPDALRAGLAEFISVLIFVFAGEGSGMAFSFLTSDGATTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGHITFIRTIVYWIAQLLGSVVACLLLKFATGGLTTSAFALSSGVGVWNAVVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWDNHWVYWLGPFIGSAIAAIVYEVLFIAPSTHEQLPTTEY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6272582 6273620 - Conep01aG0069500.1 Cone1ag0665 431356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0665 252 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0665 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cone1ag0665 252 FunFam Probable aquaporin TIP1-1 4 252 - -
Cone1ag0665 252 PANTHER AQUAPORIN-8 5 247 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cone1ag0665 252 SUPERFAMILY Aquaporin-like 15 244 IPR023271 -
Cone1ag0665 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Cone1ag0665 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0215 Cone-Chr10:1051557 Cone1ag0665 Cone-Chr1:6272582 1.90E-143 dispersed
Cone11ag1115 Cone-Chr11:8673968 Cone1ag0665 Cone-Chr1:6272582 2.67E-47 dispersed
Cone16ag0705 Cone-Chr16:8283798 Cone1ag0665 Cone-Chr1:6272582 1.19E-99 dispersed
Cone1ag0665 Cone-Chr1:6272582 Cone3ag0242 Cone-Chr3:1297684 3.30E-144 dispersed
Cone1ag0665 Cone-Chr1:6272582 Cone11ag1114 Cone-Chr11:8673417 1.52E-29 wgd
Cone1ag0665 Cone-Chr1:6272582 Cone18ag0465 Cone-Chr18:2246575 4.79E-129 wgd
Cone1ag0665 Cone-Chr1:6272582 Cone5ag1177 Cone-Chr5:5280620 2.76E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0665 K09873 - mdm:103429984 404.06