Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0687 ATGGAGCAATCAGAAACTCCATTCTCCAAGCTGTCATCAACAACAACAACAGCAGCAACAACAACCCACTTACCACCGTTTCTCCGAGACTCACGCGGTTCACTAGAAGTCTTCACTCCTTCGTCAACCTACTCGAGCCCACCGGATGAGCCGATTTTCCGATCAAACATAACATGGCGAAGCTGGGCCGAACCACGTCCCATCTCCGAACCCGACCCGCCCAATATATCTTCCAAATCCTTCAAATCCACGGAGGAGATAACTCCATGGATGGCCCTAAAAGACGACCCGGCTTCATACCCAGTTCATGCCCATAATACCATCTCCGCGATTGTCGATGAAAAATCAGCGGCGGCTCAGACGCCGTTATCTCCAGGAGGAGTGGGAGCCGCGGCTCAACGAGCCGCCGAGTGGGGCTTGGTTCTGAAGACGGATATAGAGACCGGTAAGCCTCAAGGAGTGACGGTTCGGACTTCAGGGGGAGATGAACCGAACAAACCGGAGAGGAGGACGTCGAATAACTCGGTGAGGAGTTCGAGCGACATGTCGGATGAGGGTGGGTCGAGGGAGAAAGGGATTCCTAGAGCGTCGGAAGACTTGAAGGATGTCTTATCAACTTTCCAGCAGACGTTTGTCGTTTCGGATGGAACGAAACCCGAGTACCCGATCATGTATGCGAGTGCCGGGTTCTTTAACATGACGGGTTACTCTTCAAAGGAGGTCATAGGACGAAATTGTCGGTTTTTACAGGGCCCGAATACTGACCCGGAAGATTTGAGGAAGATAAGGGATGCGTTACAGGATGGGAAAAGTTATTGTGGAAGATTGTTGAATTACAAGAAAGATGGGACGCCCTTTTGGAATCTACTTACCATTGCACCTGTGAAGGATGAATCTGGCAATGTCATGAAATTCATCGGAATGCAAGTGGAAGTGAGCAAGCACACGGAGGGGTCGAAAGATAAGATGCTCCGACCCAATGGACTACCTGAGTCCTTGATCAAATATGATTCTCGTCAAAAGGAGATGGCCACGAGTTCAGTAACCGAATTAATACATGCCGTAAAAAGGCCCCGTTCACTTAGTTTATCGACAAACCGTCCTTTTGTTAGAAAATCTGGCGATAAGAAAGGGGAAGGAGCCGGAATCCCGGCCCCGCCAAGACGAAATTCGCATGCTGGAATCAGAAGTCCGATGCAGAAGATCAGTGAATTCCCCGATAAGAAACATAAAAAACTCAAGCGTCATTCTTTCATAGGGATTGTTCGGAAAAGTCGATCGAATGTCGAGAAGTTTGAAGATGGAATGGGAGTTGATAATGATGAGAGCGATGGGAATGAACTGCTCGAAAGTGATGATGAGAGGCCAGATAGTTTGGATGATAGAGAAAGACAAAAGGAAATGAGAAAGGGTATTGATTTAGCTACTACTCTTGAACGGATTGAGAAAAACTTTGTCATTACCGATCCAAGGCTTCCTGACAATCCCATTATATTTGCATCGGATAGCTTCTTGGAGCTTTCCGAGTATAGCCGTGAAGAAATATTGGGAAGAAATTGCAGGTTTTTGCAAGGACCGGAAACAGATCCGGCCACTGTTAGAAAAATACGGGCGGCAATCAACAACCAAACGGAAGTTACTGTCCAGCTTATTAACTACACAAAAAGCGGTAAAAAATTCTGGAATGTGTTTCATTTACAACCAATGCGCGATCAAAAGGGAGAAGTGCAGTATTTTATCGGAGTACAACTTGACGGTAGTCAGCATATTGAGCCCCTCTATAGTTGCATTCCAGGAGAAACCGGGAAAGAAAGCGAAAAAACGGTCAAAGAAACGGCAGAAAATGTCGATGTAGCCATTAGAGAACTCCCGGATGCTAATTCGACACCTGAAGATTTGTGGATCAACCATTCCAAGGTGGTTCATCCTAAACCTCATCGGAGAGATAGTCCCTCTTGGAAAGCTATTCAGAAGATTCTAGCTAGCGGTGAACAGATCGGCTTGAAACATTTTAAACCGATTAAACCTTTGGGCTCGGGCGATACCGGCAGTGTTCATTTGGTGGAATTGTGTGGGACGGATCTCTACTTTGCCATGAAGGCTATGGATAAGAGTGTTATGATTAACCGAAACAAGGTGCATAGAGCTTGTCTAGAGAGGGAAATCCTGGACATGTTAGACCATCCTTTCCTTCCTGCACTATATGCATCATTTCAGACAAAAACACATGTTTGTTTAATAACTGATTACTGTCCGGGCGGAGAACTCTTTATGCTTTTGGATCGGCAACCTACAAAGGTCCTTAAAGAAGATGTGGTCAGATTTTATGCTGCTGAGGTTATTGTTGCTTTGGAGTATCTTCACTGTCAAGGGATAATTTACAGAGACTTGAAGCCTGAGAACATTTTACTTCAGGGCAATGGACATGTCTCCTTAACGGATTTCGATCTATCATGTTTAACTTATTGCAGACCACAACTTTTGTTTCCAGATGCAAATGAGAAGAAAAAGAAACAAAAAAGCCAACAGAATCCGATTTTTATTGCCGAACCAATGAAGGCATCAAACTCATTTGTCGGCACAGAAGAGTATATTGCTCCGGAAATCATAAGTGGGGCTGGCCATGCAAGTGCAGTGGACTGGTGGGCTCTTGGCATTCTTCTATACGAAATGCTTTACGGGTACACCCCATTTCGAGGAAAAACGAGGCAGAAGACATTTGCCAACATTCTTCACAAGGATCTCAAGTTTCCCAGAAGAATAACAGTAAGTTTGAGTGCAAAGCAGTTGATGTATAGGTTACTTCATAAGGACCCAAAGAACAGATTGGGTTCATTAGAAGGAGCTTATGAAATCAAACAGCACCCTTTCTTTCATGGTGTCAATTGGGCTCTTGTTCGGTCCGAGGATCCTCCTGTGCTTGAGGCACCTGTATTTGATTTTGGGAAGACCGCAGGTGAGAAAGATGTTAGCTCTATTGATCCTGAGTTGCAGGATCTGCAAATCAATGTCTTCTGA 3018 45.29 MEQSETPFSKLSSTTTTAATTTHLPPFLRDSRGSLEVFTPSSTYSSPPDEPIFRSNITWRSWAEPRPISEPDPPNISSKSFKSTEEITPWMALKDDPASYPVHAHNTISAIVDEKSAAAQTPLSPGGVGAAAQRAAEWGLVLKTDIETGKPQGVTVRTSGGDEPNKPERRTSNNSVRSSSDMSDEGGSREKGIPRASEDLKDVLSTFQQTFVVSDGTKPEYPIMYASAGFFNMTGYSSKEVIGRNCRFLQGPNTDPEDLRKIRDALQDGKSYCGRLLNYKKDGTPFWNLLTIAPVKDESGNVMKFIGMQVEVSKHTEGSKDKMLRPNGLPESLIKYDSRQKEMATSSVTELIHAVKRPRSLSLSTNRPFVRKSGDKKGEGAGIPAPPRRNSHAGIRSPMQKISEFPDKKHKKLKRHSFIGIVRKSRSNVEKFEDGMGVDNDESDGNELLESDDERPDSLDDRERQKEMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELSEYSREEILGRNCRFLQGPETDPATVRKIRAAINNQTEVTVQLINYTKSGKKFWNVFHLQPMRDQKGEVQYFIGVQLDGSQHIEPLYSCIPGETGKESEKTVKETAENVDVAIRELPDANSTPEDLWINHSKVVHPKPHRRDSPSWKAIQKILASGEQIGLKHFKPIKPLGSGDTGSVHLVELCGTDLYFAMKAMDKSVMINRNKVHRACLEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFMLLDRQPTKVLKEDVVRFYAAEVIVALEYLHCQGIIYRDLKPENILLQGNGHVSLTDFDLSCLTYCRPQLLFPDANEKKKKQKSQQNPIFIAEPMKASNSFVGTEEYIAPEIISGAGHASAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPRRITVSLSAKQLMYRLLHKDPKNRLGSLEGAYEIKQHPFFHGVNWALVRSEDPPVLEAPVFDFGKTAGEKDVSSIDPELQDLQINVF 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6419048 6427477 - Conep01aG0071900.1 Cone1ag0687 431378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0687 1005 FunFam Putative LOV domain-containing protein 755 970 - -
Cone1ag0687 1005 ProSiteProfiles PAS repeat profile. 474 543 IPR000014 -
Cone1ag0687 1005 Gene3D PAS domain 458 623 - -
Cone1ag0687 1005 ProSiteProfiles PAC domain profile. 270 324 IPR000700 -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 1 24 - -
Cone1ag0687 1005 Gene3D Transferase(Phosphotransferase) domain 1 755 971 - -
Cone1ag0687 1005 SMART pas_2 198 267 IPR000014 -
Cone1ag0687 1005 SMART pas_2 472 541 IPR000014 -
Cone1ag0687 1005 Gene3D PAS domain 210 365 - -
Cone1ag0687 1005 FunFam Putative LOV domain-containing protein 210 366 - -
Cone1ag0687 1005 SMART serkin_6 671 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0687 1005 CDD PAS 485 585 IPR000014 -
Cone1ag0687 1005 ProSiteProfiles PAS repeat profile. 196 267 IPR000014 -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 149 195 - -
Cone1ag0687 1005 SMART pac_2 547 589 IPR001610 -
Cone1ag0687 1005 SMART pac_2 273 315 IPR001610 -
Cone1ag0687 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0687 1005 Gene3D Phosphorylase Kinase; domain 1 670 754 - -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 432 467 - -
Cone1ag0687 1005 ProSiteProfiles Protein kinase domain profile. 671 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 439 454 - -
Cone1ag0687 1005 CDD PAS 223 312 IPR000014 -
Cone1ag0687 1005 SUPERFAMILY PYP-like sensor domain (PAS domain) 218 309 IPR035965 -
Cone1ag0687 1005 NCBIfam PAS domain S-box protein 223 316 IPR000014 -
Cone1ag0687 1005 NCBIfam PAS domain S-box protein 495 585 IPR000014 -
Cone1ag0687 1005 SUPERFAMILY PYP-like sensor domain (PAS domain) 486 585 IPR035965 -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 35 50 - -
Cone1ag0687 1005 FunFam LOV domain-containing protein 459 623 - -
Cone1ag0687 1005 ProSiteProfiles PAC domain profile. 544 598 IPR000700 -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 1 50 - -
Cone1ag0687 1005 ProSitePatterns Protein kinases ATP-binding region signature. 677 700 IPR017441 GO:0005524(InterPro)
Cone1ag0687 1005 FunFam LOV domain-containing protein 670 754 - -
Cone1ag0687 1005 CDD STKc_phototropin_like 669 977 - -
Cone1ag0687 1005 MobiDBLite consensus disorder prediction 365 396 - -
Cone1ag0687 1005 Pfam Protein kinase domain 674 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0687 1005 SUPERFAMILY Protein kinase-like (PK-like) 647 979 IPR011009 -
Cone1ag0687 1005 PANTHER FLIPPASE KINASE 1-RELATED 609 977 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone1ag0687 1005 Pfam PAS domain 217 313 IPR000014 -
Cone1ag0687 1005 Pfam PAS domain 493 585 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1196 Cone-Chr10:8825735 Cone1ag0687 Cone-Chr1:6419048 0 dispersed
Cone12ag1283 Cone-Chr12:9795258 Cone1ag0687 Cone-Chr1:6419048 0 dispersed
Cone1ag0687 Cone-Chr1:6419048 Cone8ag1349 Cone-Chr8:10827919 0 dispersed
Cone1ag0687 Cone-Chr1:6419048 Cone5ag1195 Cone-Chr5:5398973 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82474 PF00544 Pectate_lyase_4 7.10E-07 CL0268 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0687 K20715 - vvi:100262213 1470.29