Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0696 ATGTTAGATCTTAATCTCAATGACGTCTCGGCCGATCCGATTCAGAACGGTGAACCGGTCCTGCTCCTCGAGAAGCTCTCTCAAGGTTCGGGGAACCAAATGGACGAATCAGGGACCTCCAATTCCTCGATCGTCAATGCAGAGGCCTCGAGCAATGGAGGCGATGATGACTCCTGCTCTACACGCGCTGGTGGTGAGGTCCTTACATTCAACTTCGATATACTGAAGGAAGGGAGAAGAAACGACGTCATTACGCAAGAGTTCTTTCCGATTAGTGGAGCTGGTGGAGATATCGGAAATGGACAGGGGGACAATTCTTTTACTTCTTCGTCGGGAAAGAACTGGATCGACCTGGCTTTCAAGCAGAGCGGCTCAGGCAGTGAGGTTAGGGGGTTTCAGCCTCAACAGCAGCAGCCTATGAAGAAAAGCAGAAGAGGTCCGAGGTCTCGTAGCTCACAGTACAGAGGCGTTACTTTCTATAGGAGGACTGGAAGATGGGAATCTCATATTTGGGACTGTGGGAAGCAAGTCTATTTAGGTGGATTTGACACTGCCCACGCTGCAGCAAGAGCTTATGATCGGGCAGCTATTAAGTTCAGGGGAGTTGAAGCTGACATCAATTTTAATCTTAGTGATTATGATGACGATTTGAAGCAGATGAAGAATCTGACCAAGGAAGAATACGTTCATATACTTCGTCGGCAGAGCACTGGTTTCTCCAGGGGGAGTTCAAAATATCGGGGGGTGACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGTTCCTCGGAAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATCAAATGTAATGGAAGGGAGGCAGTCACTAACTTCGAGCCCAGCACATATGAAGGAGAGATGATTTCTGAAAGCAGTAATAGAGGTGGTGAAGAAACTCTTGACCTGAATTTAGGGATCGCACCCCCTTCACTTGATAGTGGTCCAAAGGAAATTGAGGGTCATGTTCAGTTCCAGCCCAGTCCTTGTTTTGTCCGTAATACCAGAACTCCCCAGATGGAAAGCCAATCAATTGCAACCCCTGGAAATCCACCTTTGAACGGGCCATTTATGACATCAGAGCACCCCACATTGTGGAATGGTGTCTATCCTAATTTCTTTCCAAATGAGGAAAGAGTAATATCACCATCAGAGAAGAGAATTCCAATATGCTCCTCTTCACAAGTAATTCCCAACTGGGAATGGAAAATGCAACATGGCCAGGTCAGTTCTACCCAAATGCCATTGTTCTCTACTGCAGCATCATCAGGATTCTCATTTTCAACGACTACTATTACTACCCTTCCTCCCTACCCCCCTTCACCAGCTGCCTTCCACCTGTCAAACCCGTCAAGCTCAGCCCCCAAAAATCTCTGTTTTACCTCGGCCCCACCACCCCTATACGGTCACCACCATTACCCGATGAAGCCGCCTCAGGCACCGTCATAA 1515 47.92 MLDLNLNDVSADPIQNGEPVLLLEKLSQGSGNQMDESGTSNSSIVNAEASSNGGDDDSCSTRAGGEVLTFNFDILKEGRRNDVITQEFFPISGAGGDIGNGQGDNSFTSSSGKNWIDLAFKQSGSGSEVRGFQPQQQQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNLSDYDDDLKQMKNLTKEEYVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEGEMISESSNRGGEETLDLNLGIAPPSLDSGPKEIEGHVQFQPSPCFVRNTRTPQMESQSIATPGNPPLNGPFMTSEHPTLWNGVYPNFFPNEERVISPSEKRIPICSSSQVIPNWEWKMQHGQVSSTQMPLFSTAASSGFSFSTTTITTLPPYPPSPAAFHLSNPSSSAPKNLCFTSAPPPLYGHHHYPMKPPQAPS 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6470469 6474120 - Conep01aG0072800.1 Cone1ag0696 431387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0696 504 MobiDBLite consensus disorder prediction 125 142 - -
Cone1ag0696 504 FunFam AP2-like ethylene-responsive transcription factor 152 211 - -
Cone1ag0696 504 PRINTS Ethylene responsive element binding protein signature 284 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 PRINTS Ethylene responsive element binding protein signature 246 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 CDD AP2 153 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 MobiDBLite consensus disorder prediction 125 154 - -
Cone1ag0696 504 MobiDBLite consensus disorder prediction 28 60 - -
Cone1ag0696 504 MobiDBLite consensus disorder prediction 28 58 - -
Cone1ag0696 504 SMART rav1_2 153 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 SMART rav1_2 245 308 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 SUPERFAMILY DNA-binding domain 152 210 IPR016177 GO:0003677(InterPro)
Cone1ag0696 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 41 339 - -
Cone1ag0696 504 Pfam AP2 domain 153 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 Pfam AP2 domain 244 294 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 CDD AP2 244 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 FunFam AP2-like ethylene-responsive transcription factor 244 304 - -
Cone1ag0696 504 SUPERFAMILY DNA-binding domain 244 303 IPR016177 GO:0003677(InterPro)
Cone1ag0696 504 ProSiteProfiles AP2/ERF domain profile. 245 302 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 Gene3D AP2/ERF domain 244 303 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 Gene3D AP2/ERF domain 152 210 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0696 504 ProSiteProfiles AP2/ERF domain profile. 153 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0696 Cone-Chr1:6470469 Cone8ag0138 Cone-Chr8:727322 2.09E-115 dispersed
Cone1ag0696 Cone-Chr1:6470469 Cone1ag1335 Cone-Chr1:56459580 9.17E-68 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone10ag0265 Cone-Chr10:1265019 8.70E-134 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone3ag0291 Cone-Chr3:1509147 2.89E-135 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone5ag1204 Cone-Chr5:5461638 1.02e-315 wgd
Cone1ag0696 Cone-Chr1:6470469 Cone5ag0321 Cone-Chr5:1359024 7.79E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45457 PF16135 TDBD 8.40E-15 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0696 K09284 - csv:101222024 630.557