Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0715 ATGGAAATTGATCCGAGCCATGAAGTAGTTAGTGAGGTGGAGAAGGATAATAATAAGAATAATGTGTATTATTGCAATGGGAATTGTGAGAAGAACAGTAGTTGTGTTTGCTGTTGTTTGTCCTCTTCAACTTCATCTTCTTCAAAGTTATCATCAATTCATGTCTCTTCCTCTACTTCTCTTGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCACTTCCCAAGAAAGGAAATGTTGTTGTTTACTTCCCAGAAGGCCACTTAGAACAAGCTCTTTCCAGCTCTCATTTCTCTCCCATGGAAACTCCTACTTTTGATCTTCAGCCTCAGATCTTCTGCAGGGTCTTAAATGTCCAATTACTAGCAAATAAGGAGAATGATGAGGTCTATACAAGAGTCACTTTGCTTCCCCAAGCAGAGTTGGTAGGAGGGGGTTTAGAGAGGAAAGAACTGGAAGAAATGGGGATTGATGGGGATATGGGTGGAGGCGTATCCACAAGATCTACACCTCACATGTTCTGTAAAACACTTACGGCTTCTGATACGAGCACCCATGGTGGCTTTTCGGTCCCACGCAGAGCTGCTGAGGATTGTTTCCCCCCTCTCGATTATAAACAGCAGAGACCGTCTCAGGAGCTTGTAGCAAAGGACCTCCATGGGAAAGAATGGAGGTTTCGGCATATTTTCAGAGGTCAGCCTAGGCGGCATCTGCTTACTACTGGGTGGAGTATATTTGTTAGCCAAAAGAATCTTGTTTCTGGGGATGCAGTGCTCTTCTTGAGGGGTGAAAATGGGGAGCTAAGGTTGGGTGTAAGAAGGTCAGTCCGACCTAGAAGTGATCTTCCGGATTCAGTTGTTGGCAATCAGAATTCTTATCTAAACGTTATTTCTCTTGTGTCTAATGCTATATCCTCCAAGAGCATGTTTCATGTCTTCTACAATCCAAGAGCTAGTCATGCACAGTTTGTCATACCATATCAGAAGTTTGTGAAAAGCATTACTAATTCAGTGGCTATTGGAACAAGATTCAAAATGAGATATGAAATGGACGATTCACCGGAAAGAAGGTTTAGTGGGGTAGTGATGGGAATTGGCGACATGGATCGCTATAGATGGCCCAATTCAAAATGGAAATGCTTGATAGTGAGAAGGGATGAAGGTCCCGTTAATGGTCATCAAGAACGCGTTTCTCCATGGGAGATTGATTTTTCAGTTTCTCTCCCACCATTAAACAATCAATCTTCACCAAGGCTCAAGAAACCGCGTACAAATCTCCCTTTGATCCACCCTAACAACCCCATTTCCGGCGGGGATGTGTTTTTGGACTATGAGGACTCTATAAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATTCACAGCCTTTCTACAGGCTTGATCCCACCACAAACCGCCATCTGGATTTTGAGATGCGCTTAGGTGGAATAGAAAAGGTCAATATCAATGAGTTTGCGAAGAAGGATCATAACACCACCCCTTACACTGGCTTAACGGAATCTGATAGATTTCCAAAGGTCTTGCAAGGTCAAGAAATATGCCCTTTGAGGTCACTAACTAGTAAAGGAGACATCGATTTCACTCCTTGGGGAAAGATCAATAGTTTCGGGTCCAACCCATTTAACATGTTTCAATCACCCAAGACCGGTTTCTACCATCTTGCACCAGAAGGTATTCAAAATGGGTATTTTCCTTATCCCGATACCATGAGACGGACCTATGTTAACTACTTCCCTAGAGAGAATAATAATCTCTCACTTGAACCATCTTCTTTAGAGGTTGGGAAAGTAAGAAATGAAATAGCGCATAAGTTGGTAGAAGGTATTTCAAATTCTCCAAGGCCGAGTTCTACTGATCTAAGAGATTCAAGTGAGAAAAATGTTAATAATGGTATTGGAAATGGGTGCAAGCTTTTTGGTTTTTCATTGACTGCAGAAGCAGGGAAGAGGAGCTGTAAAAAGGTTCACAAGCAAGGTAGCTTAGTTGGGAGAACCATTGATCTATCTAAGCTGAGCAGTTATGAAGAACTTCTCATAGAAATCGAGCGGCTTTTTGGCATGGAAGGGCTCTTGAGAGGTCTCGACAAAGGTTGGCAGATTTTGTACACTGATAGTGAAAACGATGTCATGGTTGTTGGAGATGACCCATGGCATGAATTCTGTAACGTAGCATCAAAAATTCATATATACACCCAAGAAGAAGTTGAGATGATGACTATTGGAATGAACATCAGTGATGATACTCAAAGCTGTTTGGACCAGAGCCCCGTCATGATTGAAGTGTCCAAGTCGTCGTCAGTGGGCCAGCCCGATACCTCTCCAATACTTCAACTTAGATAA 2358 42.71 MEIDPSHEVVSEVEKDNNKNNVYYCNGNCEKNSSCVCCCLSSSTSSSSKLSSIHVSSSTSLELWHACAGPLTSLPKKGNVVVYFPEGHLEQALSSSHFSPMETPTFDLQPQIFCRVLNVQLLANKENDEVYTRVTLLPQAELVGGGLERKELEEMGIDGDMGGGVSTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGKEWRFRHIFRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGVRRSVRPRSDLPDSVVGNQNSYLNVISLVSNAISSKSMFHVFYNPRASHAQFVIPYQKFVKSITNSVAIGTRFKMRYEMDDSPERRFSGVVMGIGDMDRYRWPNSKWKCLIVRRDEGPVNGHQERVSPWEIDFSVSLPPLNNQSSPRLKKPRTNLPLIHPNNPISGGDVFLDYEDSIRSSKVLQGQENSQPFYRLDPTTNRHLDFEMRLGGIEKVNINEFAKKDHNTTPYTGLTESDRFPKVLQGQEICPLRSLTSKGDIDFTPWGKINSFGSNPFNMFQSPKTGFYHLAPEGIQNGYFPYPDTMRRTYVNYFPRENNNLSLEPSSLEVGKVRNEIAHKLVEGISNSPRPSSTDLRDSSEKNVNNGIGNGCKLFGFSLTAEAGKRSCKKVHKQGSLVGRTIDLSKLSSYEELLIEIERLFGMEGLLRGLDKGWQILYTDSENDVMVVGDDPWHEFCNVASKIHIYTQEEVEMMTIGMNISDDTQSCLDQSPVMIEVSKSSSVGQPDTSPILQLR 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6611878 6615761 - Conep01aG0074700.1 Cone1ag0715 431406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0715 785 Gene3D - 652 745 - -
Cone1ag0715 785 SUPERFAMILY CAD & PB1 domains 660 735 - -
Cone1ag0715 785 Pfam Auxin response factor 300 381 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0715 785 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 745 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0715 785 Pfam AUX/IAA family 657 740 IPR033389 -
Cone1ag0715 785 FunFam Auxin response factor 172 276 - -
Cone1ag0715 785 SMART B3_2 174 276 IPR003340 GO:0003677(InterPro)
Cone1ag0715 785 FunFam Auxin response factor 337 409 - -
Cone1ag0715 785 MobiDBLite consensus disorder prediction 616 632 - -
Cone1ag0715 785 ProSiteProfiles PB1 domain profile. 656 740 IPR053793 -
Cone1ag0715 785 Gene3D - 337 409 - -
Cone1ag0715 785 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677(InterPro)
Cone1ag0715 785 Pfam B3 DNA binding domain 174 275 IPR003340 GO:0003677(InterPro)
Cone1ag0715 785 CDD B3_DNA 172 274 IPR003340 GO:0003677(InterPro)
Cone1ag0715 785 Gene3D - 172 276 IPR015300 -
Cone1ag0715 785 MobiDBLite consensus disorder prediction 613 632 - -
Cone1ag0715 785 SUPERFAMILY DNA-binding pseudobarrel domain 169 286 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0715 Cone-Chr1:6611878 Cone9ag0989 Cone-Chr9:5080316 7.69E-150 dispersed
Cone1ag0715 Cone-Chr1:6611878 Cone10ag0249 Cone-Chr10:1202879 2.33E-69 wgd
Cone1ag0715 Cone-Chr1:6611878 Cone19ag1251 Cone-Chr19:8592477 4.90E-69 wgd
Cone1ag0715 Cone-Chr1:6611878 Cone3ag0278 Cone-Chr3:1451499 5.89E-69 wgd
Cone1ag0715 Cone-Chr1:6611878 Cone5ag1219 Cone-Chr5:5588367 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45459 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0715 K14486 - vvi:100243320 1011.91