Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0730 ATGGTGAAAGACATAGAGGTGACGGAGCAAACCGAGTACGTGGCGAAGGACTACCAGGACCCGCCCCCGGCGCCGCTCTTCGACGCGGAGGAGCTGACGAAGTGGTCGTTTTACAGGGCTCTGATAGCAGAGTTTATAGCGACGCTTTTGTTCCTTTACATAACCGTTTTGACCGTTATTGGTTACAAAAGTCAGACTACTTCGACGAACGATCCTTGCGCCGGAGTCGGGATCCTTGGAATTGCATGGGCCTTTGGCGGCATGATATTTGTCCTCGTTTACTGCACCGCCGGTATTTCTGGAGGGCATATTAACCCGGCTGTGACGGTCGGGCTATTTATAGCACGCAAGGTGTCACTCATCCGTGCGATCTTGTACATAGTAGCACAGTGTTTAGGTGCTATCTCGGGCGTGGGATTGGTCAAGGCGTTCCAGAAGTCGTACTTTGACCGGTACGGAGGTGGGGCCAACGAGCTATCGCCTGGATACAACAAGGGAACTGGATTAGGGGCTGAGATAATCGGAACCTTTGTTCTTGTCTACACCGTCTTCTCAGCCACTGATCCTAAGAGGAATGCACGAGACTCCCATGTTCCCGTGTTGGCCCCACTTCCTATTGGATTTGCTGTTTTCATAGTTCACTTGGCTACAATCCCAATCACTGGGACTGGAATCAACCCTGCCAGAAGCTTTGGAGCTGCTGTGATTTACAACAAAGAGAAGGCTTGGGATGATCAATGGATATTTTGGGTGGGGCCATTTATTGGAGCAGCAATAGCTGCAATCTATCACCAATACATATTGAGAGCAGGAGCAATTAAGGCACTTGGGTCTTTCAGGAGCAATGCTTGA 852 50.35 MVKDIEVTEQTEYVAKDYQDPPPAPLFDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTTSTNDPCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFIARKVSLIRAILYIVAQCLGAISGVGLVKAFQKSYFDRYGGGANELSPGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAIYHQYILRAGAIKALGSFRSNA 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6731374 6732917 - Conep01aG0076300.1 Cone1ag0730 431421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0730 283 SUPERFAMILY Aquaporin-like 31 269 IPR023271 -
Cone1ag0730 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Cone1ag0730 283 FunFam Probable aquaporin PIP1-2 24 283 - -
Cone1ag0730 283 CDD MIP 39 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 NCBIfam MIP family channel protein 43 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone1ag0730 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Cone1ag0730 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 7 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0730 Cone-Chr1:6731374 Cone8ag1291 Cone-Chr8:10585800 1.32E-158 dispersed
Cone1ag0730 Cone-Chr1:6731374 Cone1ag1352 Cone-Chr1:56550924 1.42E-173 wgd
Cone1ag0730 Cone-Chr1:6731374 Cone18ag0517 Cone-Chr18:2534956 2.81E-177 wgd
Cone1ag0730 Cone-Chr1:6731374 Cone5ag1231 Cone-Chr5:5673499 4.18E-197 wgd
Cone1ag0730 Cone-Chr1:6731374 Cone5ag0337 Cone-Chr5:1440129 6.09E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0730 K09872 - mdm:103447881 513.457