Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0733 ATGGCGACGGCGTTAGCGCACCACAGGGAGATAGTAGATAACAATAATAGTGGGAACATAAACAGACACATAGACAGCAGCGGAAAGTATGTGCGTTACACGGCGGAGCAAGTGGAGGCGCTGGAAAGAGTGTATGCGGAGTGTCCAAAGCCGAGTTCTTTGCGCCGCCAGCAGTTGATCCGTGACTGCCCTATTCTCGCTACTGTCGAGCCCAAACAGATCAAAGTCTGGTTCCAAAATCGCAGGTGTAGAGAGAAGCAGAGGAAGGAGGCTTCTCAGTTGCAGACGGTGAATAGGAAGCTTTCTGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGTTTGCAGAAACAGACATCAGTCGATGCAAGCTGTGAGTCAGTTGTTACTACTCCGCAGCATTCTCTCAGAGACGCTAATAACCCTGCTGGACTGCTCTCCATTGCAGAGGAGACCTTGGCGGAGTTCCTTTCCAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGGATCTTTGCTATTTCACAGTGTTGCAGTGGAGTGGCGGCTCGAGCATGCGGTCTAGTAAGCCTAGAACCTACAAAGATTGCAGAGATCCTTAAAGATCGTCTTTCTTGGTTCCGCGATTGCCGGAATCTCGAGGTTTTCACCATGTTTTCTGCCGGAAATGGTGGAACAATTGAACTTGTCTACACACAGGTATATGCCCCTACTACACTAGCTCCGGCAAGGGACTTTTGGACTCTTAGATACACCACAAATTTGGATAATGGCAGCCTTTTGGTTTGTGAGAGATCACTTTCAGGGTCCGGAGCAGGCCCAAGTGCTGCAGCTGCTACTCAGTTTGTGAGAGCCGAAATGTTTCCTAGTGGGTATTTAATCCGACCATGCGAAGGTGGAGGGTCTATTATTCATATTGTAGACCACCTTAGTCTTGAGGCATGGAGTGTACCAGAGGTGATTCGACCCCTTTATGAATCTTCAAAGGTTGTGGCCCAGAAAATGACGATTGCATCTCTGAGATATATACGACAAATAGCTCAAGAGACAAGTGGAGAAATTGTATATAGTTTGGGAAGGCAGCCTGCTGTTCTTCGGACTTTTAGCCAAAGACTGAGCAGAGGCTTTAACGATGCGGTCAATGGATTTAATGATGATGGGTGGTCCTTGATCAACTCTGATGGCTCCAAAGATGTGATCATAGCCGTTAATATATCCAAGAACTCGGTTGCATCTTCTAGTTCCACAAATTCACTAGCTTTCCCTGGTGGGGTTCTTTGCGCAAAGGCTTCCATGCTGCTTCAAGATGTCCCGCCTGCTGTGCTGGTCCGGTTCTTGAGGGAACACAGGTCAGAATGGGCGGACTTTAACGTGGATGCTTACTCAGCTGCTTCTTTGAAAGCCGGTTCATATGCTTACCCCTGGATGCAGCCCACAAGATTTACAGGGAGCCAAGTCATCATGCCACTTGGCCACACCATAGAACATGAAGAGTTACTTGAAGTTATTCGACTTGAAGGCCATTCTCTTGCTCAAGAAGATGCCCTTGTTTCGAGATATATTCATCTCTTACAGATATGTACTGGAATCGATGAGAACTCTGTAGGAACCTTTTCGGAACTTGTTTTTGCTCCCATTGATGAAACGTTTCCGGATGATGCACCTTTGCTTCCCTCTGGCTTCCGTATTATCCCTCTGGATTCCAAATCAGGAAATACAAAGGATACATTGGGGATGCATCGGACTTTGGATCTGACATCCAGTCTTGAAGTGGGCCCAGCGACTAACAACAATGCAGATGGGTCGTCTTGTCAGAATTCTCGATCGGTTTTAACGATTGCCTTCCAGTTTCCATTTGAGAGCAATCTTCAGGAAAATGTTGCCACCATGGCTTGTCACTATGTTCGTACTGTAATCTCCTCGGTTCAAAGGGTTGCCATGGCCGTATCCCCATCTGGGCTCGGGCCGACTCTTGGCCCAAATGTCTCTCCCGGTTCTCCTGAAGCACTTACCCTAACTCACTGGATTTGCCAGAGCTACAGTTATTATTTAGGGGCAGAACTGATAAGATCTGGTTCTCCGGGTGGTGGTGATTCCATATTGAAACATCTTTGGAATCATCAAGATGCCATTTTATGCTGTTCATTGAAGCCACTCCCTGTCTTCATGTTTGCAAACAAGGCCGGGCTCGACATGTTGGAAACAACTCTAGTTGCTCTACAGGATGTCACATTGGATAAGATATTTGATGAATCTGGACGCAAGGCATTATGTTCAGATTTTGCGAAGTTAATGCAACAGGGTTCTGCCAATTTGCTCCCCGGAATCTGCATATCGACAATGGGTCGCAGAGTTTCATACGAACAAGCTGTTGCGTGGAAGGTGCTTACTTCGGAAGAGAACTCTGTTCATTGCCTTGCCTTTTCTTTCATAAACTGGTCTTTTGTGTGA 2484 47.1 MATALAHHREIVDNNNSGNINRHIDSSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRDCPILATVEPKQIKVWFQNRRCREKQRKEASQLQTVNRKLSAMNKLLMEENDRLQKQTSVDASCESVVTTPQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQCCSGVAARACGLVSLEPTKIAEILKDRLSWFRDCRNLEVFTMFSAGNGGTIELVYTQVYAPTTLAPARDFWTLRYTTNLDNGSLLVCERSLSGSGAGPSAAAATQFVRAEMFPSGYLIRPCEGGGSIIHIVDHLSLEAWSVPEVIRPLYESSKVVAQKMTIASLRYIRQIAQETSGEIVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINSDGSKDVIIAVNISKNSVASSSSTNSLAFPGGVLCAKASMLLQDVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSYAYPWMQPTRFTGSQVIMPLGHTIEHEELLEVIRLEGHSLAQEDALVSRYIHLLQICTGIDENSVGTFSELVFAPIDETFPDDAPLLPSGFRIIPLDSKSGNTKDTLGMHRTLDLTSSLEVGPATNNNADGSSCQNSRSVLTIAFQFPFESNLQENVATMACHYVRTVISSVQRVAMAVSPSGLGPTLGPNVSPGSPEALTLTHWICQSYSYYLGAELIRSGSPGGGDSILKHLWNHQDAILCCSLKPLPVFMFANKAGLDMLETTLVALQDVTLDKIFDESGRKALCSDFAKLMQQGSANLLPGICISTMGRRVSYEQAVAWKVLTSEENSVHCLAFSFINWSFV 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6795882 6801587 + Conep01aG0076600.1 Cone1ag0733 431424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0733 827 SMART START_1 147 357 IPR002913 GO:0008289(InterPro)
Cone1ag0733 827 Pfam MEKHLA domain 682 826 IPR013978 -
Cone1ag0733 827 CDD homeodomain 29 89 IPR001356 GO:0003677(InterPro)
Cone1ag0733 827 Pfam START domain 148 355 IPR002913 GO:0008289(InterPro)
Cone1ag0733 827 SUPERFAMILY Bet v1-like 147 359 - -
Cone1ag0733 827 CDD bZIP 81 118 - -
Cone1ag0733 827 ProSiteProfiles 'Homeobox' domain profile. 24 88 IPR001356 GO:0003677(InterPro)
Cone1ag0733 827 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 24 827 IPR044830 GO:0003700(InterPro)
Cone1ag0733 827 Pfam Homeodomain 29 87 IPR001356 GO:0003677(InterPro)
Cone1ag0733 827 Coils Coil 94 118 - -
Cone1ag0733 827 ProSiteProfiles START domain profile. 138 366 IPR002913 GO:0008289(InterPro)
Cone1ag0733 827 SUPERFAMILY Homeodomain-like 25 94 IPR009057 -
Cone1ag0733 827 Gene3D - 184 364 IPR023393 -
Cone1ag0733 827 Gene3D - 23 97 - -
Cone1ag0733 827 SMART HOX_1 26 92 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0733 Cone-Chr1:6795882 Cone20ag1266 Cone-Chr20:8282202 0 dispersed
Cone1ag0733 Cone-Chr1:6795882 Cone11ag1301 Cone-Chr11:9613529 0 wgd
Cone1ag0733 Cone-Chr1:6795882 Cone18ag0280 Cone-Chr18:1361069 0 wgd
Cone1ag0733 Cone-Chr1:6795882 Cone5ag1233 Cone-Chr5:5706683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45461 PF04949 Transcrip_act 1.90E-71 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0733 K09338 - rcu:8266275 1375.92