Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0736 ATGAACGAATCAGAAAAGAGCTTAGATCCTGAGCTATGGCATGCTTGTGCTGGAGGGATGGTCCAAATGCCTTCTCTCAACTCAAAAGTCTTCTACTTCCCTCAAGGCCATGCAGAACACGCCCAATCCCCTGTCGATTTCTCCTCATCCCTAAAAATTCCTGCCCTAATCCCTTGCCGTGTCCTCTCTATCAAATTCCTAGCTGACCCAGGAACCGATGAAGTTTTCGCAAAGCTCAAATTGCTCCCTTTACCCAAAACCGACCCCAATTTTGATCTGGCTCACCACGACGAGGCCCCCCTTTGCGGTCCTCAAAATCCTGAAAAGCCCACCAACTTTTCCAAGACCTTAACCCAATCTGATGCTAACAATGGCGGGGGGTTTTCGGTCCCCAGATATTGTGCAGAGACAATATTCCCCCGCCTTGATTACGCGGCTGACCCGCCAGTCCAAACTGTCACGGCAAAGGATGTTCATGGTGAGGTTTGGAAGTTCCGGCACATTTATCGTGGAACCCCCCGACGCCATCTGTTAACTACAGGGTGGAGCTTGTTCGTGAATCAGAAGAAGTTGATTGCAGGGGATTCAATCGTGTTTTTTCGGGCTGAAAATGGAGAACTTCGGATGGGGATCAGGCGGACCAAGCGGGGGCTTATTGGGAGTGCACTGGAGGGTCCCATGGGGTGGACCCCGAGTGGTGGTGGTGGTGGTGGTGGGTTTTCAATGTATTTGAGGGATGATGAGAGTAGTAAGATGATGATGAGAAATGGTTGTCATGTGAATTTGATGAGTAGTAGGGGGAAGGGAGGGGGAGGAGGAAGGGTTAGGTCGGAGGCGGTTATTGAAGCAGGGGTGCTTGCAAGCAGCGGTCAAGCCTTTGAGGTTGTTTATTACCCAAGGGCAGGTACGCCAGAATTCTGTGTGAAGGCGGGGTCCGTTATGACGGCGATGAGGACCCAATGGTGCTCAGGGATGAGGTTTAAGATGGCATTTGAAACCGAGGATTCTTCGAGGATTAGTTGGTTTATGGGAACTATTGCTTCGGTCCAAGTTGCTGACTCTATTTATTGGCCTAATTCTCCATGGCGCCTTCTTCAGGTGACATGGGATGAGCCGGATTTGCTCCAAAATGTGAAGCGTGTGAGTCCATGGTTGGTTGAGGTGGTTTCAAACATGCCTGTTATTCACCTAACATTACCTTTCTCACCTCCGAGAAAGAAGTTGCGGATTCCAGGCCAGCACCCCGACTTCTCCTTTGCTGACGGCTCATATCCCATGCCATCATTCTTAAACAATATTCCCCCCATTGGGCCGAGCAGCAGCCCATTATGTTGTCTTTCCGATAACAACAACTCTCCTCTAGTAGGCATACAGGGAGCCAGGCATACTCAATTCCTCCAAACCAATTCTTTCTCACCATCCGAGCTCTACCTTAACAGCAGCAGCAACAAAATGCAGTTAGGGCTGATCCCATCTTCTGGTTTTTATCGGATGCCCAACAACATATTCACACCCAAGACTAGGCCCAATAGTGACAGCAACCTATCTTGCTTTCTAACAATCGGAAATGCCAGTCCGGAAAAAATTACAGAGAAACCTGATAATGTGAAGGAACATGAGTTTGTTCTCTTCGGTCAACTGATATTAACTGAAGAGCAAATGTCTTGTAGCTCTTCTGGGAAAAGCTCCTTGGATTTGATTTCTGAAGGGGTTATAAAGCCCTTCCTCTCGAATGGTTCAGCCGGGTCTACACTCGAGCAACGGATTTCGCCCGAAAAGTCCCCGAGCATAGGGTTTTCATGGTATCATCATAAAAGGACCGAGCTTGGTCTTATGGATACAGGTCATTGTAAGGTGTTTTTGGAGTCAGAAGATGTGGGTCAGAACATAGATCTATCAGGTTTTGAATCCTATGAGGAGTTGTATCGGAAGCTAAGCAACATGTTCGGGATTGAAAGATCAGACATGATTGGTCATGTTTTGTACGAAGATTCAGCTGGTGCTATCAAACAAATTGGAGATGAGCTGTTCGGTGATTTTATGAGCGTGGCTAAGAAGCTCACGATTTTGACTGGTTTGGGAAGGGACAGGATATTGAGGACACGAATTCCAGGAATGAGGGGAGCTGAAAATGGGCTAAATGCATCGAACAAGCCAGGGCCAGCCTTGAGCATATTTGCTTAA 2184 47.94 MNESEKSLDPELWHACAGGMVQMPSLNSKVFYFPQGHAEHAQSPVDFSSSLKIPALIPCRVLSIKFLADPGTDEVFAKLKLLPLPKTDPNFDLAHHDEAPLCGPQNPEKPTNFSKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVTAKDVHGEVWKFRHIYRGTPRRHLLTTGWSLFVNQKKLIAGDSIVFFRAENGELRMGIRRTKRGLIGSALEGPMGWTPSGGGGGGGFSMYLRDDESSKMMMRNGCHVNLMSSRGKGGGGGRVRSEAVIEAGVLASSGQAFEVVYYPRAGTPEFCVKAGSVMTAMRTQWCSGMRFKMAFETEDSSRISWFMGTIASVQVADSIYWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVEVVSNMPVIHLTLPFSPPRKKLRIPGQHPDFSFADGSYPMPSFLNNIPPIGPSSSPLCCLSDNNNSPLVGIQGARHTQFLQTNSFSPSELYLNSSSNKMQLGLIPSSGFYRMPNNIFTPKTRPNSDSNLSCFLTIGNASPEKITEKPDNVKEHEFVLFGQLILTEEQMSCSSSGKSSLDLISEGVIKPFLSNGSAGSTLEQRISPEKSPSIGFSWYHHKRTELGLMDTGHCKVFLESEDVGQNIDLSGFESYEELYRKLSNMFGIERSDMIGHVLYEDSAGAIKQIGDELFGDFMSVAKKLTILTGLGRDRILRTRIPGMRGAENGLNASNKPGPALSIFA 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6827721 6831582 - Conep01aG0076900.1 Cone1ag0736 431427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0736 727 FunFam Auxin response factor 321 394 - -
Cone1ag0736 727 SUPERFAMILY DNA-binding pseudobarrel domain 110 214 IPR015300 -
Cone1ag0736 727 Gene3D - 612 696 - -
Cone1ag0736 727 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677(InterPro)
Cone1ag0736 727 FunFam Auxin response factor 111 215 - -
Cone1ag0736 727 Gene3D - 111 214 IPR015300 -
Cone1ag0736 727 CDD B3_DNA 113 213 IPR003340 GO:0003677(InterPro)
Cone1ag0736 727 SMART B3_2 113 215 IPR003340 GO:0003677(InterPro)
Cone1ag0736 727 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677(InterPro)
Cone1ag0736 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 691 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0736 727 Pfam Auxin response factor 286 366 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cone1ag0736 727 Gene3D - 321 393 - -
Cone1ag0736 727 ProSiteProfiles PB1 domain profile. 614 697 IPR053793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1264 Cone-Chr13:9569338 Cone1ag0736 Cone-Chr1:6827721 3.91E-212 dispersed
Cone19ag1251 Cone-Chr19:8592477 Cone1ag0736 Cone-Chr1:6827721 3.46E-215 dispersed
Cone1ag0736 Cone-Chr1:6827721 Cone3ag0278 Cone-Chr3:1451499 2.57E-205 dispersed
Cone1ag0736 Cone-Chr1:6827721 Cone11ag1059 Cone-Chr11:8336690 6.25E-170 wgd
Cone1ag0736 Cone-Chr1:6827721 Cone18ag0519 Cone-Chr18:2547457 1.14E-170 wgd
Cone1ag0736 Cone-Chr1:6827721 Cone5ag1237 Cone-Chr5:5735524 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45462 PF00069 Pkinase 8.50E-33 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0736 K14486 - csv:101216500 835.869