Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0768 ATGACGGAAAACGGGGAGGATAAATTGCTGGCGGTTGCTCGCCACATCGCTAAAACCCTCGGCCACAATGAATCCATGGCTGATGATATCTTACAGATCTTCTCCACCTTCGACGGCAGGTTTTCACGCGAGAAGATGCTCGACGACGATCCTAGAGCCTTTATTGTACTCGAACGGAACCTGGACTCCCTTGACCGTCAGATTTCTCAGTACGTGTCCAACGAACGCCCGATTTGGGCTGACGCTGCTGATTCCTCGGCCTTCCTCGACGCTATCGACGAGTTGATCGCGATCATCAGGGAATGGACTCCTGTGGCTGGAGACAAGTCTGTCGGCGTGTGCCTAGCTCGTGCTGATGATCTGATGCAGCATACTATGTTCCGAGTGGAGGATGAGTTTAGGTCGTTGATCGAACGCGGTGGCGAGTCGTACGAGTTGACTCGCTCCTCTTACAGGAACGCCGAGTCAACTGGTGATTTGTCCTTTGACTCGGAGGATGAAGAAGTAGGCGGAGGAATTATCAGCGACGGTGAGGATCATGAGATCCCGATAGCCCAACCTATCACTGACTATGACATCGTGATCGACGCGCTTCCTTCAGGTACGATCAGCGATCTCCATGAGATAGCGAAACGCATGGTGGCTGCCGGATTTGCAAAGGAGTGCTCACACGTGTACAGTAGCTCGAGAAGAGACTTCTTGGAAGAGAGCCTCTCGAGATTAGGGCTACAGAAGCTGAGCATAAAAGAAGTTCAGAAGTTGCCGTGGCAAGATCTAGGAGACGAGATTGAGCGATGGATCAAAGCCATGAACGTCGCTCTTAGGATTCTCTTCCCGAGCGAGCGTAGACTATGCGACCGCCTCTTCTCGGGCTTATCTTCTGCCTCCGATCTCTCATTCATGGAGGTATGCAGGGGATCCATGATTCAGCTCTTGAATTTTGCAGATGCAATAGCAATCAGCTCCAGATCTCCTGAGAGGTTGTTCAAAATCCTTGACTTGTACGAGACGTTGAGGGATTTGATGCCAGAGTTCGAGTCAGTATTCTCTGATAAGTACTGTTCGTTTCTTAGAAATGATGTGATTACGATTTGGAAAAGGTTAGGGGAAGCAATCAAAGGGATATTCATGGAACTGGAGAATTCAATCCGTCGAGATCCAGCCAAAGCTGCAGTTCCTGACGGTGGGCTCCACCCGATCACTCGATACGTGATGAACTATCTATTGGCAGCTTGTCGATCTAGGCAGACTCTTGAACAGGTCTTTGACGAAAATACCTTTTCATCAAGAGAGTCGACTTCTCTATCAGTGGAAATTGCCTGGATTATGGAGCGGTTAGAGAGCAATTTAGAGATGAAGTCGAAACTATACAAAGACCCCGCGTTGTGCAATGTTTTCATGATGAATAACGGAAGGTATATCGTGCTGAAGGTAAAAGATAACGATCTCGGTTCGTTCTTAGGAGATGATTGGATTAGGAAACACACCGCTAAAGTCTGGCAGTATTTTGTCAATTACCAGAGGAGCTCGTGGAATAAAGTTCTAGCTGTTTTGAAGATAGAAAATGGCTCATTAGCTCCTAATTTGTCTTCTGCAAATTCCATGAAAGAAAAGCTCAAATCTTTCAACATGTACTTTGATGAAATTTGCAAAATTCAATCTACTTGGATAATTTTCAACGACCAGTTAAGGGACGAAGCAAGGATTTCAGTTGCAAAAACTGTTTTGCCAGCATACCAGAATTTTATTGCCAGGTACCAGGATGTTGTGGAAAATGGGAAGAGGACCGAACGGTATGTTAAGTACACTGCTGAGGATGTGGAAGCTCGGATCAACGATCTGTTTCAGGGGAAGGGTGGATCGGGTAGTGGGCGGGGGAGGTCAAGGTAA 1890 47.3 MTENGEDKLLAVARHIAKTLGHNESMADDILQIFSTFDGRFSREKMLDDDPRAFIVLERNLDSLDRQISQYVSNERPIWADAADSSAFLDAIDELIAIIREWTPVAGDKSVGVCLARADDLMQHTMFRVEDEFRSLIERGGESYELTRSSYRNAESTGDLSFDSEDEEVGGGIISDGEDHEIPIAQPITDYDIVIDALPSGTISDLHEIAKRMVAAGFAKECSHVYSSSRRDFLEESLSRLGLQKLSIKEVQKLPWQDLGDEIERWIKAMNVALRILFPSERRLCDRLFSGLSSASDLSFMEVCRGSMIQLLNFADAIAISSRSPERLFKILDLYETLRDLMPEFESVFSDKYCSFLRNDVITIWKRLGEAIKGIFMELENSIRRDPAKAAVPDGGLHPITRYVMNYLLAACRSRQTLEQVFDENTFSSRESTSLSVEIAWIMERLESNLEMKSKLYKDPALCNVFMMNNGRYIVLKVKDNDLGSFLGDDWIRKHTAKVWQYFVNYQRSSWNKVLAVLKIENGSLAPNLSSANSMKEKLKSFNMYFDEICKIQSTWIIFNDQLRDEARISVAKTVLPAYQNFIARYQDVVENGKRTERYVKYTAEDVEARINDLFQGKGGSGSGRGRSR 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53788018 53790256 + Conep01aG0080700.1 Cone1ag0768 431459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0768 629 Pfam Exo70 exocyst complex subunit C-terminal 265 613 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone1ag0768 629 Gene3D Exocyst complex component Exo70 73 623 - -
Cone1ag0768 629 FunFam Exocyst subunit Exo70 family protein 72 623 - -
Cone1ag0768 629 SUPERFAMILY Cullin repeat-like 79 615 IPR016159 -
Cone1ag0768 629 PANTHER EXOCYST COMPLEX PROTEIN EXO70 59 617 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone1ag0768 629 Pfam Exocyst complex component Exo70 N-terminal 61 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0768 K07195 - - mdm:103412781 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag1017 Cone-Chr16:9851808 Cone1ag0768 Cone-Chr1:53788018 5.17E-115 dispersed
Cone1ag0768 Cone-Chr1:53788018 Cone2ag0024 Cone-Chr2:154176 7.41E-115 dispersed
Cone1ag0768 Cone-Chr1:53788018 Cone5ag1050 Cone-Chr5:4612611 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g709 . . Bda02g00882 . Bpe01g00069 . . . Cmo13g00020 . Cma01g00707 Cma13g00032 Car01g00642 Car13g00010 Sed13g1351 . Cpe20g00898 Bhi08g00343 Tan01g2524 Cmetu12g0712 . . . Lcy11g0247 . . . . . . . Cone1ag0768 Cone5ag1050 . . . . . . . Blo14g00063 . . . . . . . . . . . . . . Cpe02g01140 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G03540 73.8 5.4e-275 944.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G03540 73.9 1.6e-274 942.6
Cone5ag0416 . 10 649 EXO70 exocyst subunit family AT5G03540 74.8 1.3e-273 939.5
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G03540 70.9 3.6e-263 904.8
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G03540 69.8 1.3e-257 886.3
Cone13ag1144 . 1 628 EXO70 exocyst subunit family AT5G52340 80.5 3.7e-297 1017.7
Cone19ag1123 . 1 628 EXO70 exocyst subunit family AT5G52340 78.2 2.4e-288 988.4
Cone1ag1422 . 1 649 EXO70 exocyst subunit family AT5G52340 72.1 5.5e-269 924.1
Cone11ag0966 . 12 662 EXO70 exocyst subunit family AT5G52340 71.3 8.8e-267 916.8
Cone5ag0416 . 12 649 EXO70 exocyst subunit family AT5G52340 72.3 4.8e-265 911.0
Cone13ag1144 . 145 621 EXO70 exocyst subunit family AT5G52350 64.3 1.5e-175 613.6
Cone19ag1123 . 145 621 EXO70 exocyst subunit family AT5G52350 62.6 3.2e-170 595.9
Cone5ag0416 . 147 649 EXO70 exocyst subunit family AT5G52350 58.8 1.4e-165 580.5
Cone11ag0966 . 150 662 EXO70 exocyst subunit family AT5G52350 58.8 3.1e-165 579.3
Cone1ag1422 . 147 649 EXO70 exocyst subunit family AT5G52350 58.9 3.4e-164 575.9
Cone1ag0768 . 1 617 EXO70 exocyst subunit family AT5G58430 68.8 5.0e-254 874.4
Cone5ag1050 . 1 621 EXO70 exocyst subunit family AT5G58430 69.5 6.5e-254 874.0
Cone1ag0768 . 1 616 EXO70 exocyst subunit family AT1G07000 53.0 2.8e-177 619.4
Cone5ag1050 . 1 620 EXO70 exocyst subunit family AT1G07000 52.8 5.7e-175 611.7
Cone16ag1017 . 53 682 EXO70 exocyst subunit family AT5G13990 53.9 4.6e-184 642.1
Cone2ag0024 . 72 686 EXO70 exocyst subunit family AT5G13990 53.9 1.2e-179 627.5
Cone20ag1348 . 9 609 EXO70 exocyst subunit family AT1G72470 63.7 9.0e-211 730.7
Cone17ag0057 . 9 609 EXO70 exocyst subunit family AT1G72470 64.0 2.2e-209 726.1
Cone17ag0057 . 9 606 EXO70 exocyst subunit family AT1G54090 61.5 7.2e-205 711.1
Cone20ag1348 . 9 606 EXO70 exocyst subunit family AT1G54090 60.4 6.8e-203 704.5
Cone20ag1348 . 9 607 EXO70 exocyst subunit family AT3G14090 61.8 1.5e-210 729.9
Cone17ag0057 . 9 607 EXO70 exocyst subunit family AT3G14090 62.0 7.5e-210 727.6
Cone13ag0215 . 13 660 EXO70 exocyst subunit family AT5G50380 64.2 2.0e-232 802.7
Cone19ag0206 . 13 660 EXO70 exocyst subunit family AT5G50380 63.4 1.2e-229 793.5
Cone17ag1082 . 10 681 EXO70 exocyst subunit family AT4G31540 71.8 6.8e-289 990.3
Cone20ag0630 . 10 671 EXO70 exocyst subunit family AT4G31540 72.5 4.4e-288 987.6
Cone1ag0674 . 11 584 EXO70 exocyst subunit family AT3G55150 51.6 3.3e-160 562.8
Cone11ag1101 . 1 559 EXO70 exocyst subunit family AT3G55150 50.6 8.6e-153 538.1
Cone1ag0674 . 8 593 EXO70 exocyst subunit family AT2G39380 51.4 3.4e-165 579.3
Cone5ag1180 . 23 606 EXO70 exocyst subunit family AT2G39380 50.9 1.2e-162 570.9
Cone11ag1101 . 1 568 EXO70 exocyst subunit family AT2G39380 50.9 3.7e-156 549.3
Cone10ag0284 . 36 621 EXO70 exocyst subunit family AT3G09520 55.1 5.3e-179 625.2
Cone3ag0313 . 36 627 EXO70 exocyst subunit family AT3G09520 56.0 5.8e-178 621.7
Cone13ag1312 . 49 611 EXO70 exocyst subunit family AT3G09520 55.4 5.8e-170 595.1
Cone19ag1300 . 49 613 EXO70 exocyst subunit family AT3G09520 54.3 1.8e-166 583.6
Cone1ag0674 . 2 592 EXO70 exocyst subunit family AT5G59730 50.4 1.5e-160 563.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009102 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 0 1 33