Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0772 ATGGAGAACAAGTCGAACATTTTGATGGGAAGATATGAAGTAGGGAGATTACTAGGCCAAGGAACCTTTGCGAGGGTTTACTATGCAAGGGGCATACAAACTAATCAAAGTGTGGCCATTAAGGTGGTAGACAAAGAGAAGATTCTGAAGGTTGGGTTGATTGAACAGATCAAGAGAGAAATTTCTGTAATGAGATTGGTTAGGCACCCTAATGTTGTACATCTGTATGAGGTAATGGCCACAAAAACTAAGATCTACTTTGTCATGGAGTATGCTAAAGGCGGTGAGCTCTTCCACAAGATCTCAAAAGGGAAGCTGAAGGAGGATATGGCCCAGAAATATTTCCAGCAGCTAATTAACGTGGTCGACTTCTGTCACAGTAGAGGTGTATATCACCGTGATATAAAACCGGAGAATCTATTGCTAGATGAGAGTGGGAACCTTAAAGTATCTGATTTTGGATTAAGTGCCCTAGCTGAGTCTAGGCGGCAAGATGGGCTTCTTCACACTACTTGTGGGACCCCCGCCTATGTCGCCCCTGAAGTCATAAACAGGAAAGGGTATGATGGTGCCATGGCAGATATTTGGTCTTGTGGGGTTGTCTTGTTTGTCTTGTTGGCTGGTTATCTCCCTTTTCAGGATTCAAATTTGATGGAGATGTATAGAAAGATTGGAAAAGCAGATTACAAATGCCCTACTTGGTTTCCTCCTGAGCCACGGAGACTGCTCAGAAAGATATTGAATCCAAACCCAGAAGCTAGGATTTCTATAGAGAAGATTAAGGAAAATTCCTGGTTTAAAAGGGGATTAAGTAGCCCTCCTGAATGTATCAAAACTGAGAAGGAAAGTAAGGATGAAGGGCCTAAATCAGATACTACTAATACAGCTAATGGTTCTGGTCCGTCTGGGTCATGTGAACAAGTAGTTACTAAGCCTCCAAACTTGAATGCTTTTGATATCATCTCTCTATCCTCAGGATTCAATCTGTCTGGATTATTTGGAGACATGCATAAAAAGGAAGCGAGATTTACATCGAAAAGACCTGCCTCCTTCATAATATCTAAGCTCGAGGAGATGGCGAAACATCTGGGGCTTAGAGTGCAGAAGAAGGAGCCGGGTCTTATGAAATTGGATGGAGTAAAAAAAGGTAGAAATGGGGTCCTGTCTATTGACGCAGAGATTTTCGAGATCACTCCATATCTTCATCTGGTGGAGATGAAGAAATCGAATGGAGATACGATGGAATATGAGAGGAAGCTGGAAGAGGAGATAAGGCCTGCTCTTACCGACATCATTTGGGTTTGGCAGGGTCAGGAACAGCTTCCAGAACAGGCGCTGCTGCATGGACAGTGA 1353 43.16 MENKSNILMGRYEVGRLLGQGTFARVYYARGIQTNQSVAIKVVDKEKILKVGLIEQIKREISVMRLVRHPNVVHLYEVMATKTKIYFVMEYAKGGELFHKISKGKLKEDMAQKYFQQLINVVDFCHSRGVYHRDIKPENLLLDESGNLKVSDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINRKGYDGAMADIWSCGVVLFVLLAGYLPFQDSNLMEMYRKIGKADYKCPTWFPPEPRRLLRKILNPNPEARISIEKIKENSWFKRGLSSPPECIKTEKESKDEGPKSDTTNTANGSGPSGSCEQVVTKPPNLNAFDIISLSSGFNLSGLFGDMHKKEARFTSKRPASFIISKLEEMAKHLGLRVQKKEPGLMKLDGVKKGRNGVLSIDAEIFEITPYLHLVEMKKSNGDTMEYERKLEEEIRPALTDIIWVWQGQEQLPEQALLHGQ 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53809907 53812614 + Conep01aG0081200.1 Cone1ag0772 431463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0772 450 MobiDBLite consensus disorder prediction 274 289 - -
Cone1ag0772 450 MobiDBLite consensus disorder prediction 269 308 - -
Cone1ag0772 450 Pfam NAF domain 312 369 IPR004041 GO:0007165(InterPro)
Cone1ag0772 450 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Cone1ag0772 450 MobiDBLite consensus disorder prediction 290 308 - -
Cone1ag0772 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0772 450 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Cone1ag0772 450 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Cone1ag0772 450 FunFam Non-specific serine/threonine protein kinase 310 433 - -
Cone1ag0772 450 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0772 450 CDD CIPK_C 316 428 - -
Cone1ag0772 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 426 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone1ag0772 450 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0772 450 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Cone1ag0772 450 FunFam Non-specific serine/threonine protein kinase 2 295 - -
Cone1ag0772 450 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0772 450 Gene3D Kinase associated domain 1, KA1 313 434 - -
Cone1ag0772 450 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165(InterPro)
Cone1ag0772 450 CDD STKc_SnRK3 11 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0437 Cone-Chr10:2031148 Cone1ag0772 Cone-Chr1:53809907 3.29E-223 dispersed
Cone1ag0772 Cone-Chr1:53809907 Cone5ag1047 Cone-Chr5:4584453 6.03E-304 dispersed
Cone7ag1230 Cone-Chr7:9124954 Cone1ag0772 Cone-Chr1:53809907 4.65E-13 dispersed
Cone1ag0772 Cone-Chr1:53809907 Cone1ag0774 Cone-Chr1:53814054 7.15E-137 proximal
Cone1ag0772 Cone-Chr1:53809907 Cone5ag1046 Cone-Chr5:4578612 4.93E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82479 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0772 - - - 0.0