Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0774 ATGCCGGATATCTTAGAGGAAGAACGACATGTCGTGGCTAACGCCAACGCCCTGTTCGGCAAATACGAGGTCGGAAAGCTCCTCGGATGCGGCGCCTTCGCGAAGGTGTATCACGCGCGAGACGTCCGCTCCGGCGTGAGCGTCGCCATCAAAGTAATCAACAAGAAGAGACTAATGAACGGCACCTCTTTGATGTCAAACATCAAGCGCGAGATATCAATCATGAGCCGCCTCCGCCACCCTCACATCGTCAAGCTCCATGAAGTCCTCGCCACCAAATCCAAGATTTACTTCGTCATGGAATTCGTCAAAGGAGGCGAGTTATTCTCCAAGGTGGCTAAAGGTCGGTTCGCCGAAGATCTCTGCCGGAAATATTTCCAGCAACTCATCTCCGCCGTGAGCTACTGCCACCTCCGCGGCATATTCCACCGCGATCTAAAACCCGAGAATCTCCTCCTCGACGAGAGCGGCGACCTCAAGGTCTCCGATTTCGGACTCTGCGCCGTAACGGACCAGGTCCGACCTGACGGGTTGTTGCACACGCTTTGTGGGACCCCTGCTTACGTTGCGCCGGATATTTTAACGAAGAAAGGTTACGATGGAGCGAAGGTTGACGTGTGGTCGTGTGGGGTAATACTGTTCGTTTTAAACGCCGGTTACCTTCCGTTTAACGACCCGAATCTGATGGAAATGTACAGGAAGATTTACAAGGGAGAATATCGCTGCCCGAAATGGACGTCTACGGATATGAAACGGTTCTTGTCCCGCCTTCTTGATACCAATCCAGATACCAGAATCACAGTCGACGAGATTCTGCGGGACCCATGGTTCACGAAAGGAGACTCTTACAAGAAGGTGAAGTTCTACGATGATTACGAGGATTCTAATGATTTCGCGTGTAAGTTAGATGATCATGGCGATGTTCATGAGGAGGTTAACAAATTCGAGAACATGACTGCGTTCGATATCATATCGTTCTCGTCCGGGTTGGATTTGTCAGGTTTGTTTGACGAGTCGTATCATTCGATGGAGGACGGAGAGCGCATTGTGGTGGCGCAGAGGCCGGAGAAGGTTTTGGAGAAAGTGGAGGAGTTTGGGAGGGCGGAGAAGTTGAAGGTGAGGAGGAAGAAGGAGTGGAGGGTGGAGGTGGAAGGGCAAAATGGTAGAATCAAGTTCTGGGTAGAAGTTTATAGGTTGAATGATGCGCTGGTTATTGTTGAAGCTAAGAGAAGAGGAGGAGAAGCTGCCAGTTATAAGGAGTTGTGGAAGAACAAGGTAAGACCTCAGCTCATGATGATGATTATTAGTCCTCAGCCAGAAGAGGCGGCAACAGCTTAG 1338 50.52 MPDILEEERHVVANANALFGKYEVGKLLGCGAFAKVYHARDVRSGVSVAIKVINKKRLMNGTSLMSNIKREISIMSRLRHPHIVKLHEVLATKSKIYFVMEFVKGGELFSKVAKGRFAEDLCRKYFQQLISAVSYCHLRGIFHRDLKPENLLLDESGDLKVSDFGLCAVTDQVRPDGLLHTLCGTPAYVAPDILTKKGYDGAKVDVWSCGVILFVLNAGYLPFNDPNLMEMYRKIYKGEYRCPKWTSTDMKRFLSRLLDTNPDTRITVDEILRDPWFTKGDSYKKVKFYDDYEDSNDFACKLDDHGDVHEEVNKFENMTAFDIISFSSGLDLSGLFDESYHSMEDGERIVVAQRPEKVLEKVEEFGRAEKLKVRRKKEWRVEVEGQNGRIKFWVEVYRLNDALVIVEAKRRGGEAASYKELWKNKVRPQLMMMIISPQPEEAATA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53814054 53815675 - Conep01aG0081400.1 Cone1ag0774 431465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0774 445 FunFam Aurora kinase A 15 106 - -
Cone1ag0774 445 Gene3D Phosphorylase Kinase; domain 1 8 104 - -
Cone1ag0774 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0774 445 CDD CIPK_C 319 430 - -
Cone1ag0774 445 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 427 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cone1ag0774 445 Pfam NAF domain 316 374 IPR004041 GO:0007165(InterPro)
Cone1ag0774 445 Pfam Protein kinase domain 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0774 445 FunFam Non-specific serine/threonine protein kinase 12 311 - -
Cone1ag0774 445 ProSiteProfiles Protein kinase domain profile. 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0774 445 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524(InterPro)
Cone1ag0774 445 Gene3D Kinase associated domain 1, KA1 314 435 - -
Cone1ag0774 445 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Cone1ag0774 445 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165(InterPro)
Cone1ag0774 445 SMART serkin_6 22 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0774 445 Gene3D Transferase(Phosphotransferase) domain 1 105 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0774 Cone-Chr1:53814054 Cone5ag1046 Cone-Chr5:4578612 1.48E-295 dispersed
Cone1ag0772 Cone-Chr1:53809907 Cone1ag0774 Cone-Chr1:53814054 7.15E-137 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82480 PF14215 bHLH-MYC_N 2.40E-16 CL0161 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0774 - - - 0.0