Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0779 ATGTACAAGCGTCAATTAGCAGCTGGACAGCGCCGCCCCCTGCGCGGCGGTGATTTCGATCAATCTCAGCTGGTGCATCTTGGATACGTCGAAACAGATCCTACTGATCGCTATGGTCGGTTTGAAGACGTTCTAGGCAAGGGAGCCATGAAAACAGTGTACAAGGCAATCGATGAAGTTCTTGGAATGGAAGTAGCCTGGAATCAGGTCAAACTCAATGAAGTGCTCCGCAATCTAGACGATCTACAACGTCTCTACTCAGAGGTCCACCTCCTCAGCACCCTTAATCATGATTCCATCATTCGGTTCTACACCTCTTGGATTGATATTGAGAACACGACTTTCAATTTCATAACCGAGATGTTCACATCAGGGACACTCAGAGAGTACAGAGAGAGGTATAAGCGAGTTGACATCCGAGCCATTAAGAGCTGGGCCTGCCAAATCCTACACGGTCTTGTATACTTGCATGGCCATGACCCTCCTATAATACACAGAGACCTCAAGTGTGACAATATCTTTGTAAACGGCCATCTTGGGCAAGTCAAGATCGGTGATCTTGGGCTAGCAGCAATTCTTCGAGGTTCCCAGTTTGCTCACAGTGTAATAGGCACGCCAGAATTCATGGCTCCAGAATTATATGAAGAGGATTACAACGAGCTTGTAGATGTCTACTCATTTGGCATGTGTGTTCTTGAGATGCTTACCTCTGAGTACCCTTACAGTGAATGTACCAACCCTGCACAGATATATAAGAAAGTCACATCTGGGAAGCTACCTGCAGCATTGAACCGGATTCAAGACCTAGAAGCACGGAGATTTGTGGAAAAATGCTTAGTACCTGCATCAAAAAGGTTACCAGCTAAAGAGCTATTGCTCGATCCATTTCTCTTGGCCGACAAAGCTAAATTACCCAAGCAAGTATTTGAAAGGCATAAGCCATTTCTGAATGCCAAAGAAATGGAAAAGCTGCAAGTGAGTGGCCGTTCATGCAGGACCAATATGACAATCACAGGGAAGCTGAATCCTGAAGATGATACTCTCATTCTCAAAGTTCAAGTTGTTGATAAAGACGGTTCCATTAGAAACATATATTTTCCTTTTGACATCGTAAACGACACCGCAAGTGAAGTTGCAACTGAGATGGTGAAGGAGTTGGATATTATTGATTGGGAGCCATCTGAAATTGCAGATATGATTGAAGGAGAGATATCTGCTTTGGTTCCAACCCGGAAGAGCCATGACTTTTCTCATCAAGAAGCATATCATACTTTGAATTATCATGGAGAAGATGATTATGATGCTGATGCTGATGCTGATGGGCCTCATCATACTTTTCACTCTTCCTCGTCATCACAAGCAACACTATCAGGCTGGATTGGCTCTCCAAGGATTGATGAAAGGATAATTGGGTTTAATTGGTTCCACGATGATTTGCTTGATGATACCAGTTCTCAAAGCTCTTCAAACTCCGAAAAGTATTCCAACTTGAATTACTTCTGCAATGACGATCATGAACCTAACATGAACCCCGAAAGAGGAAGTGAACATGCAATCACACAGAGTCACAAGTCAACAAGGTTTTGTCCAGAAGAACACCGCAACAATGTGGAGTCCTTGGCAAGAAATTGTTACAAGCAGTGCTGCAGAGCTTTGCATGGACACACCACTGATACGAAAATGGACAGGCGTAAATTGACAAGGAACAGGTCACTAGTAGATGTACACAGCCAATTACTACACCGCTCATTGGTGGAGGAAGTGAATAGAAGACGTCTGTTCAAAACAGTTGGAGCCGTGGAGAATATTGGGTTTCAGTCGCCATTCCAGGTTCCTTCAGATCAACCTAGAGATCCCATGACAAGTGCAAGACAAGGCAAGAGGCAAGGGCATCATGGGAGAGCATAG 1908 44.29 MYKRQLAAGQRRPLRGGDFDQSQLVHLGYVETDPTDRYGRFEDVLGKGAMKTVYKAIDEVLGMEVAWNQVKLNEVLRNLDDLQRLYSEVHLLSTLNHDSIIRFYTSWIDIENTTFNFITEMFTSGTLREYRERYKRVDIRAIKSWACQILHGLVYLHGHDPPIIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQFAHSVIGTPEFMAPELYEEDYNELVDVYSFGMCVLEMLTSEYPYSECTNPAQIYKKVTSGKLPAALNRIQDLEARRFVEKCLVPASKRLPAKELLLDPFLLADKAKLPKQVFERHKPFLNAKEMEKLQVSGRSCRTNMTITGKLNPEDDTLILKVQVVDKDGSIRNIYFPFDIVNDTASEVATEMVKELDIIDWEPSEIADMIEGEISALVPTRKSHDFSHQEAYHTLNYHGEDDYDADADADGPHHTFHSSSSSQATLSGWIGSPRIDERIIGFNWFHDDLLDDTSSQSSSNSEKYSNLNYFCNDDHEPNMNPERGSEHAITQSHKSTRFCPEEHRNNVESLARNCYKQCCRALHGHTTDTKMDRRKLTRNRSLVDVHSQLLHRSLVEEVNRRRLFKTVGAVENIGFQSPFQVPSDQPRDPMTSARQGKRQGHHGRA 635
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53827788 53832174 - Conep01aG0081900.1 Cone1ag0779 431470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0779 635 MobiDBLite consensus disorder prediction 606 622 - -
Cone1ag0779 635 FunFam Probable serine/threonine-protein kinase WNK1 24 120 - -
Cone1ag0779 635 MobiDBLite consensus disorder prediction 436 457 - -
Cone1ag0779 635 SUPERFAMILY Protein kinase-like (PK-like) 40 298 IPR011009 -
Cone1ag0779 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0779 635 SMART serkin_6 39 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0779 635 Pfam Protein kinase domain 42 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0779 635 Gene3D - 334 415 - -
Cone1ag0779 635 ProSiteProfiles Protein kinase domain profile. 39 297 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0779 635 MobiDBLite consensus disorder prediction 606 635 - -
Cone1ag0779 635 Gene3D Transferase(Phosphotransferase) domain 1 122 303 - -
Cone1ag0779 635 CDD STKc_WNK 37 297 - -
Cone1ag0779 635 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 26 605 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cone1ag0779 635 Gene3D Phosphorylase Kinase; domain 1 26 120 - -
Cone1ag0779 635 FunFam probable serine/threonine-protein kinase WNK9 122 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag1442 Cone-Chr19:9392454 Cone1ag0779 Cone-Chr1:53827788 2.11E-215 dispersed
Cone1ag0779 Cone-Chr1:53827788 Cone7ag0248 Cone-Chr7:1045463 1.34E-158 dispersed
Cone1ag0779 Cone-Chr1:53827788 Cone5ag1044 Cone-Chr5:4561701 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82481 PF05641 Agenet 7.20E-13 CL0049 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0779 K08867 - mdm:103418174 793.882