Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0781 ATGGCGAGTACCAATCTAGCAGCATTATCTTGCAACTACTTTCTCATGATCTTTGTTAGCAGCTTGCTCGTGGCTACTGCTGCGGCTTACGGTGAATGGCAGAGCGCTCATGCCACTTTCTACGGTGGCGGCGATGCATCGGGGACGATGGGAGGAGCATGCGGTTATGGAAATCTATACAGCCAAGGATACGGAACTAACACGGCAGCTCTCAGCACGGCCTTGTTCAACAACGGCTTAACCTGCGGTGCCTGTTTCGAAATGCGGTGCAATGCCGACCCCAAGTGGTGCCGCCCTGGTGCCACCACAACCGTTACGACAACTAACTTCTGCCCGCCCAACCCTTCCTTGCCCAACAACAACGGCGGCTGGTGCAACCCGCCTCTTCAGCACTTCGACTTAGCGGAACCGGCCTTCTTGCAGATTGCACAGTACCGTGCCGGGATTGTCCCCGTGTCGTACAGAAGAGTGCTGTGTGCCAAGAAAGGAGGGATCCGGTTCACGATCAATGGCCACTCTTACTTCAACCTAGTCATGATCAGTAATGTGGGTGGGGCTGGAGATGTTCATGCCGTTTCGGTCAAGGGGTCCAAGACCGGGTGGCAGCCCATGTCGAGGAATTGGGGCCAGAATTGGCAGAGCAACTCCTACCTTAACGGTCAGTCCCTGTCATTCCAAGTCACATCTAGTGATGGTAGGACCCTCACAAGTAACAACGTGGCGCCTGCTGGTTGGCAGTTTGGTCAAACATTCCAAGGTCTCCAATTTTAA 771 54.22 MASTNLAALSCNYFLMIFVSSLLVATAAAYGEWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACFEMRCNADPKWCRPGATTTVTTTNFCPPNPSLPNNNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSYRRVLCAKKGGIRFTINGHSYFNLVMISNVGGAGDVHAVSVKGSKTGWQPMSRNWGQNWQSNSYLNGQSLSFQVTSSDGRTLTSNNVAPAGWQFGQTFQGLQF 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 53837989 53838845 - Conep01aG0082100.1 Cone1ag0781 431472
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0781 256 Pfam Lytic transglycolase 68 154 IPR009009 -
Cone1ag0781 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 SMART dpbb_1 68 154 IPR007112 -
Cone1ag0781 256 Gene3D - 18 160 IPR036908 -
Cone1ag0781 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 164 IPR007112 -
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cone1ag0781 256 FunFam Expansin 23 160 - -
Cone1ag0781 256 SUPERFAMILY Barwin-like endoglucanases 32 182 IPR036908 -
Cone1ag0781 256 PANTHER EXPANSIN-A15 16 255 IPR002963 GO:0009664(InterPro)
Cone1ag0781 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cone1ag0781 256 Gene3D - 163 256 IPR036749 -
Cone1ag0781 256 CDD DPBB_EXPA_N 32 159 - -
Cone1ag0781 256 FunFam Expansin 164 256 - -
Cone1ag0781 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cone1ag0781 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag1061 Cone-Chr15:8779097 Cone1ag0781 Cone-Chr1:53837989 5.63E-86 dispersed
Cone18ag0813 Cone-Chr18:5002561 Cone1ag0781 Cone-Chr1:53837989 2.81E-109 dispersed
Cone18ag1249 Cone-Chr18:8835827 Cone1ag0781 Cone-Chr1:53837989 7.79E-95 dispersed
Cone1ag0781 Cone-Chr1:53837989 Cone5ag0142 Cone-Chr5:611803 2.63E-147 dispersed
Cone11ag0236 Cone-Chr11:1143911 Cone1ag0781 Cone-Chr1:53837989 2.93E-94 transposed
Cone1ag0781 Cone-Chr1:53837989 Cone1ag1621 Cone-Chr1:57641927 9.09E-146 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0781 - - - 0.0