Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0793 ATGATGTTATTCGGGCATAACAGATTTCTGGCTGTTGCCCGTTTCGTAATATGTTGCTGTTGGTGTTTTTCACTCCTTGTTGCAGAAGCACAGGAGGACAACATTACTGCTCCTTCTGAGGTAAGTGCGTTGAATGCTATAAAGGAGAGTCTGGTTGATCCATATAAGAATCTGGAAAGTTGGAGTAAAGGGGGGGATCCTTGTGCTTCCAATTGGAATGGAGTTTTGTGCTATAACACCACTCTGGATGATGGCTATCTTCATGTTACAGAACTGCAACTACTAAACATGAATTTATCGGGCAGTTTAGCGCCCGAGCTTGGCAACTTATCGTACATGAAGATATTGGATTTTATGTGGAACAATATAAGCGGGAGCATTCCGAAAGAGATAGGCAGTATCTCAACTTTGGAGCTATTGCTTCTCAATGGAAACCACTTAACCGGCTCATTACCGGACGAGCTCGGTAATCTTCGTAAGTTGGACAGAATACAGATTGACACGAACCAGATATCAGGTCCGGTCCCCAAATCATTTGCAAACCTGACTGCAGTACAGCACTTTCACATGAACAACAATTCAATTAGCGGGCAAATCCCATTCGAGCTGTACAGATTACCGAAACTTGTTCATATCCTTCTTGACAATAACAACTTGACTGGTTATCTTCCTTCAGAGCTGTCTCAGTTGCCAAACTTACGTATACTTCAGCTCGATAACAACAATTTCACTGGGACTACAATTCCGGAGTCCTATAGCAATATGAGTGCATTGCTGAAGATGAGTCTTAGGAACTGTGGATTGCAAGGACCAATTCCGGATTTGAGCAGGATTCCTAGGCTCGGTTATCTTGACCTCAGTTCAAATCAGCTAAATGGATCGATACCGGAAAATAAGCTTTCCGCAAATATCACGACTATTGATTTATCGAACAACAGGCTCACCGGAACTATTCCGACTAACCTTTCTGATCTTCCTCTTCTTCAGAAATTGTCCGTTGCAAAAAATTTATTAAATGGCGCTGTCCCAGCCTCAATTTGGCAAAGCAGGAGTTCTAACTATTTGCATGAACTTGTAGTTGAGCTGCAGAACAACAGTCTTTCAAGTATTTCAGGAAGTATCGATATCCCTCAAAACGTCACTGTTTGGCTTAAAGGAAATCCCCTCTGTTCAAATGCCACTCTGTCTGAGTTTTGTGGATCGGAAAGTGGAGAAGAAACAACAGTCAACTCGACGAGCCTCACTGGCGCCTGTAATAGTCAAACATGCCCTTCCGCTTATGAATGTTTCCCTGCACTATGTCCAGGGTTATGTTTCTGCGCAGCCCCTCTTCATGTTCAATACCGGTTAAAAAGTCCCGGGCTTTCAAACTTTACTTCGTACCAAACTGCATTTGAAGAATATCTCACATCCGGTCTTGAAATAGATCTTAATCAGCTCAACATTGAATTGTTCGTGTGGGAGAAGGGACCGAGACTGAGAATGTACCTTGAAATTTTCCCTCAATATGATGCTGCTAATACCAACAATTCACGTCTGTTCAATAATAGTGAGGTTCGAAGAATCAGAGGGATGTTTACGTCATGGGAGATTCCGGATAGTAGTGTTTTTGGGCCATATGAACTCCTTGCTTTCCCGCTGGTAGACCCTTATGGCAATGGTCTGTCCTCATCATCTTCATCCGGAATAAGTAAGGGCGCACTGGCTGGCATAATAGTAGGGGCAATTGCAGGTGCAGTTATTGTCTCTGCAATCATTTCTCTATTCATAACAAGAGCATATATGAAGAAACGTAATGCAATGTCTAGACGACGACTCCTTTCGAGAATCTCCATAAAGATCGATGGTGTGAAGGATTTCATGTACAGAGAAATGGCCTTAGCCACAAACGACTTCGACAGCTCTGCTCAAGTTGGGCAGGGAGGTTATGGTAAGGTGTATAGGGGAATTCTTGCTGATGGCACAGCTGTGGCCATTAAACGTGCACAAGAGGCTTCACTGCAGGGCGAGAAGGAATTCCTAACAGAGATAGAACTCCTGTCAAGGTTACATCACCGCAACCTTGTGTCATTGCTCGGATATTGTGATGAAGAAGGCGAGCAGATGTTGGTGTACCAATTAATGCCGAATGGCACTCTCCGGGATCACCTTTCTGCTAAGTCGAAAGAGCCATTGAGTTTTTCCATGAGATTAAGCATCGCATTGGGATCAGCTAAGGGGATTCTTTACCTGCATACGGAAGCAGATCCTCCAATATTTCACCGAGATATCAAGGCAAGCAATATACTACTCGACTCAAAGATGAGAGCAAAGGTAGCTGATTTCGGACTTTCACGGCTTGCCCCGGTCCCGAATCTTGAAGGAAACACACCTGCTCATGTGTCGACGGTTGTGAAGGGCACTCCGGGATACCTTGATCCAGAGTACTTCTTAACTCATAAGCTGACGGACAAGAGTGATGTCTATAGCTTGGGGGTGGTCTTTCTAGAACTCTTGAGCGGGATGCCGCCAATCTCACATGGCAAAAATATTGTTAGAGAGTTTAACCACGTATATCAATCCGGGACGATATTTTCGATAATCGATAAACGAATGGGGTCTTACCCGTCGGAGTGTGTGGAGAAGTTTGTGAAGTTAGCCATTCAATGCTGCCAGGAAGAAACGGATGCACGTCCTTCCATGGCAGAAGTTGTTAGAGCACTGGAGCACATAGCAGACATGGTGCCCGATTTCGACTCCAAAACAATAACCAAGGAATTTTCTAGTGATACAAGTGGTTATCTCCCAAGTAGTATGATGAGCCCATCGTCTTCTTCAGCGAAGAATCCTTATTCGATGTCGGATGTTTCCGGCAGCGCCCTCATTAGCGGAGTTGTTCCAACCATCACGCCTAGGTAA 2898 44.34 MMLFGHNRFLAVARFVICCCWCFSLLVAEAQEDNITAPSEVSALNAIKESLVDPYKNLESWSKGGDPCASNWNGVLCYNTTLDDGYLHVTELQLLNMNLSGSLAPELGNLSYMKILDFMWNNISGSIPKEIGSISTLELLLLNGNHLTGSLPDELGNLRKLDRIQIDTNQISGPVPKSFANLTAVQHFHMNNNSISGQIPFELYRLPKLVHILLDNNNLTGYLPSELSQLPNLRILQLDNNNFTGTTIPESYSNMSALLKMSLRNCGLQGPIPDLSRIPRLGYLDLSSNQLNGSIPENKLSANITTIDLSNNRLTGTIPTNLSDLPLLQKLSVAKNLLNGAVPASIWQSRSSNYLHELVVELQNNSLSSISGSIDIPQNVTVWLKGNPLCSNATLSEFCGSESGEETTVNSTSLTGACNSQTCPSAYECFPALCPGLCFCAAPLHVQYRLKSPGLSNFTSYQTAFEEYLTSGLEIDLNQLNIELFVWEKGPRLRMYLEIFPQYDAANTNNSRLFNNSEVRRIRGMFTSWEIPDSSVFGPYELLAFPLVDPYGNGLSSSSSSGISKGALAGIIVGAIAGAVIVSAIISLFITRAYMKKRNAMSRRRLLSRISIKIDGVKDFMYREMALATNDFDSSAQVGQGGYGKVYRGILADGTAVAIKRAQEASLQGEKEFLTEIELLSRLHHRNLVSLLGYCDEEGEQMLVYQLMPNGTLRDHLSAKSKEPLSFSMRLSIALGSAKGILYLHTEADPPIFHRDIKASNILLDSKMRAKVADFGLSRLAPVPNLEGNTPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLSGMPPISHGKNIVREFNHVYQSGTIFSIIDKRMGSYPSECVEKFVKLAIQCCQEETDARPSMAEVVRALEHIADMVPDFDSKTITKEFSSDTSGYLPSSMMSPSSSSAKNPYSMSDVSGSALISGVVPTITPR 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 53896719 53901555 + Conep01aG0083400.1 Cone1ag0793 431484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0793 965 ProSiteProfiles Protein kinase domain profile. 632 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0793 965 Gene3D Ribonuclease Inhibitor 201 301 IPR032675 -
Cone1ag0793 965 SUPERFAMILY L domain-like 67 416 - -
Cone1ag0793 965 MobiDBLite consensus disorder prediction 921 943 - -
Cone1ag0793 965 Pfam Leucine Rich Repeat 232 253 IPR001611 GO:0005515(InterPro)
Cone1ag0793 965 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Cone1ag0793 965 Pfam Leucine Rich Repeat 281 297 IPR001611 GO:0005515(InterPro)
Cone1ag0793 965 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515(InterPro)
Cone1ag0793 965 SUPERFAMILY Protein kinase-like (PK-like) 618 938 IPR011009 -
Cone1ag0793 965 Gene3D Transferase(Phosphotransferase) domain 1 708 920 - -
Cone1ag0793 965 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Cone1ag0793 965 FunFam Leucine-rich repeat protein kinase family protein 596 707 - -
Cone1ag0793 965 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 708 917 - -
Cone1ag0793 965 Pfam Protein kinase domain 634 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0793 965 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 38 200 - -
Cone1ag0793 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone1ag0793 965 CDD STKc_IRAK 638 904 - -
Cone1ag0793 965 PANTHER RECEPTOR-LIKE PROTEIN 55 59 902 - -
Cone1ag0793 965 Pfam Leucine rich repeat 159 219 IPR001611 GO:0005515(InterPro)
Cone1ag0793 965 ProSitePatterns Protein kinases ATP-binding region signature. 638 660 IPR017441 GO:0005524(InterPro)
Cone1ag0793 965 SMART serkin_6 632 904 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0793 965 Gene3D Ribonuclease Inhibitor 37 200 IPR032675 -
Cone1ag0793 965 Gene3D Phosphorylase Kinase; domain 1 605 707 - -
Cone1ag0793 965 Gene3D Ribonuclease Inhibitor 302 394 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0793 Cone-Chr1:53896719 Cone3ag0487 Cone-Chr3:2395717 2.85E-247 dispersed
Cone1ag0793 Cone-Chr1:53896719 Cone5ag1032 Cone-Chr5:4499206 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82482 PF00160 Pro_isomerase 1.50E-46 CL0475 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0793 - - - 0.0