Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0825 ATGCCGGACGTGCAAGCCCTTGTGAATGATTTTCTTAACAAGCTTAAGAAACGCAAAATTGAGGGCTCGCAAGGCACGGCAAGGCAGACTGCTGAGTTGTTAAGGTCATTTATCTCACAGCAGCGAGTGCCATACACAAATCAGGCTGGAGCATTAATCGATGCTGTGAAGGCTGTTGGCGAGCATCTGATTGCTGCAAATCCTGTTGAGCTCGCTGTGGGTAATATTGTGAGGCGTGTTTTGAATATTATTAGAGAGGAGGATCTCTCCCTCACTACAGCTGCTGTTGGCGGATTGAGTTTATCAGCAGTAAGTGACGATGAAGATGACAATGAGAGAGACCCTGTTCTATCAGCTGCTGCTGCAAGGAGCACTTTGCGTCCTCCTTCCTTGCAAACTCTACTTGAAGGTGCTCCTGACTCAGCAGCCATTCCTCACACTTCTTCATCTGGAGGTGATTCTGAGGGTAAAAGCAAATCTGCTGATAAAAGTTCAAGAAGTCGAAAGTTGAAGCATGATGTCATTGAAGCTGTTAATGAACTTATTCAAGATATTACAACTTGCCATGAACAAATAGCTGAGCAAGCAGTAGAACACATCCATCAGAATGAGGTCATATTAACCCTGGGAAGCTCCCGAACAGTTTTGGAGTTTCTCTGTGCTGCAAAGGAGAAAAAGAGGTCCTTTCGGGTATTTGTTGCTGAGGGTGCTCCCAGGTATCAAGGGCACCTTCTTGCTAAAGATTTAGTTGCCAGAGGCTTACAAACTACACTTATTACTGACTCTGCAGTTTTTGCCATGATTTCACAGGTGAACATGGTAATAGTTGGAGCTCATGCCGTCATGGCAAATGGTGGGGTTATAGCTCCTGTTGGATTAAATATGGTTGCGCTTGCAGCTAAAAGGCATGCTGTGCCTTTTGTTGTACTTGCTGGCAGTCACAAGCTGTGCCCTTTGTATCCACACAATCCCGAGGTCTTACTCAATGAGCTAAGATCCCCGTCTGAGCTACTAGATTTTGGAGAATTTTCGGATTGCATGGACTTTGGAAGTAGCACCGGTTCTCATCTTCTTCATGTGGTCAATCCTACATTTGACTATGTGCCACCAAAACTCGTCAGCCTGTTTATTACTGATACGGGAGGTCATAGCCCATCATACATGTACCGGCTCATTGCTGATTATTACTCTGCTGATGATTTGGTGGTTCAGAGAAGACTTTCTCCAGGAAGTTGA 1236 45.15 MPDVQALVNDFLNKLKKRKIEGSQGTARQTAELLRSFISQQRVPYTNQAGALIDAVKAVGEHLIAANPVELAVGNIVRRVLNIIREEDLSLTTAAVGGLSLSAVSDDEDDNERDPVLSAAAARSTLRPPSLQTLLEGAPDSAAIPHTSSSGGDSEGKSKSADKSSRSRKLKHDVIEAVNELIQDITTCHEQIAEQAVEHIHQNEVILTLGSSRTVLEFLCAAKEKKRSFRVFVAEGAPRYQGHLLAKDLVARGLQTTLITDSAVFAMISQVNMVIVGAHAVMANGGVIAPVGLNMVALAAKRHAVPFVVLAGSHKLCPLYPHNPEVLLNELRSPSELLDFGEFSDCMDFGSSTGSHLLHVVNPTFDYVPPKLVSLFITDTGGHSPSYMYRLIADYYSADDLVVQRRLSPGS 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54088214 54096804 + Conep01aG0086800.1 Cone1ag0825 431516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0825 411 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA 3 402 IPR051855 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Cone1ag0825 411 SUPERFAMILY NagB/RpiA/CoA transferase-like 7 400 IPR037171 -
Cone1ag0825 411 Gene3D - 188 395 IPR042529 -
Cone1ag0825 411 MobiDBLite consensus disorder prediction 156 170 - -
Cone1ag0825 411 Pfam Initiation factor 2 subunit family 19 384 IPR000649 GO:0044237(InterPro)
Cone1ag0825 411 FunFam translation initiation factor eIF-2B subunit beta 188 396 - -
Cone1ag0825 411 MobiDBLite consensus disorder prediction 139 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0038 Cone-Chr17:238632 Cone1ag0825 Cone-Chr1:54088214 4.78E-21 dispersed
Cone1ag0825 Cone-Chr1:54088214 Cone20ag1363 Cone-Chr20:8743825 6.16E-19 dispersed
Cone1ag0825 Cone-Chr1:54088214 Cone5ag0997 Cone-Chr5:4296577 1.21E-270 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0825 K03754 - rcu:8270898 709.523