Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0827 ATGAAGAAGAAGCTCGACACCCGTTTTCCAGCGGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTAGGGAAAATAGCATTAGCAGTTCCTGTTTTAGTTTCCAAAGCATTGGAATTGTTTCTCCAAGACCTTTGTGATCGTACATATGAGATCACGCTTGAGAGAGGAGCCAAGACGATGAATTCAATGCATTTAAAACACTGTGTACAGAGCTATAATGTTTTTGATTTCCTGAGGGAAATTGTCAGCAGGGTTCCTGATTATGGCCATGGTCACTGTTCGTCAGATGCTGCTGATGATAAAAAGAAAAGGAAACCCACTGGTGATGAATGCAATGACAGCGATGAAGAGTTGAAGAAGAGCAAGATGCATGAGATGTCCCACCACAGCAGCAGGGGTGGTGGTGGAAGAGGAAGAGGCAGGGGCCGAGGCCGAGGCCGAGGCCGTGGACGGGCAAATCGAACTGCAGAAAGAGAGACTTGCCATCACGATCGGATCGAATCCAAGCCATCCATTCCTCTACAGAACAACAGCAGCAGCAAACAAAACTCGTGTCCTAACATGCTTATTGATAACAGTTTCATCCCAGAGTCGAAAGAATTGTCAAGAGAAAGTGTCTCAGCAAGCAATGAAGCTAACAACCCTCCAGCACCACCTACTCAAAATATCGACCTAAATGCGGACTCAAACGGGAATTACGAGGACCCCACCAAGGTGGCCCCGGCAGCTGAGCCACCTGGCCCCGCAACGGCAGGGCCTAGCACAGAAACTAAACACGAAGAGTACCCAGGCTGGTCTCTTGCCGACGTGGACAAGATGAACATAGACCCCGTTCATCTTGCACAGCTTACTACGAGATTAGACGAGGGCGATGAAGACTATGATGAGGAAGAGTGA 903 48.17 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTMNSMHLKHCVQSYNVFDFLREIVSRVPDYGHGHCSSDAADDKKKRKPTGDECNDSDEELKKSKMHEMSHHSSRGGGGRGRGRGRGRGRGRGRANRTAERETCHHDRIESKPSIPLQNNSSSKQNSCPNMLIDNSFIPESKELSRESVSASNEANNPPAPPTQNIDLNADSNGNYEDPTKVAPAAEPPGPATAGPSTETKHEEYPGWSLADVDKMNIDPVHLAQLTTRLDEGDEDYDEEE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54103338 54107934 - Conep01aG0087000.1 Cone1ag0827 431518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0827 300 MobiDBLite consensus disorder prediction 91 272 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 201 235 - -
Cone1ag0827 300 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cone1ag0827 300 MobiDBLite consensus disorder prediction 152 171 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 136 151 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 172 193 - -
Cone1ag0827 300 SUPERFAMILY Histone-fold 3 95 IPR009072 GO:0046982(InterPro)
Cone1ag0827 300 FunFam dr1-associated corepressor homolog 1 86 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 95 134 - -
Cone1ag0827 300 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cone1ag0827 300 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0827 K21752 - - mdm:103409560 286.574
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0385 Cone-Chr1:3344233 Cone1ag0827 Cone-Chr1:54103338 8.60E-58 transposed
Cone5ag1421 Cone-Chr5:8944071 Cone1ag0827 Cone-Chr1:54103338 3.11E-59 transposed
Cone1ag0827 Cone-Chr1:54103338 Cone5ag0992 Cone-Chr5:4277530 5.72E-176 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 1.6e-88 323.2
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.0 2.7e-88 322.4
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 9.8e-54 207.6
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.2 3.7e-53 205.7
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.9 1.1e-49 194.1
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT3G48590 63.0 3.3e-49 192.6
Cone10ag0745 . 79 206 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.9 1.5e-46 183.7
Cone1ag1761 . 6 239 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.2 4.1e-52 202.2
Cone10ag0745 . 1 174 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.0 2.6e-51 199.5
Cone3ag1500 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 2.5e-49 193.0
Cone10ag1432 . 22 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.8 2.5e-49 193.0
Cone3ag0756 . 1 166 CCAAT-HAP5 Transcription Factor Family AT1G08970 66.3 2.7e-48 189.5
Cone13ag0228 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone19ag0213 . 36 134 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cone1ag1761 . 6 244 CCAAT-HAP5 Transcription Factor Family AT1G54830 58.2 5.0e-60 228.4
Cone3ag0756 . 70 246 CCAAT-HAP5 Transcription Factor Family AT1G54830 64.4 6.3e-55 211.5
Cone10ag0745 . 1 211 CCAAT-HAP5 Transcription Factor Family AT1G54830 57.8 1.8e-54 209.9
Cone10ag1432 . 22 217 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.7 4.1e-54 208.8
Cone3ag1500 . 22 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.4 9.1e-54 207.6
Cone13ag0228 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone19ag0213 . 36 194 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.5e-51 199.5
Cone13ag0228 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 41 193 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.5 4.2e-37 152.1
Cone19ag0213 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.4 6.5e-80 294.7
Cone13ag0228 . 36 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 79.9 1.1e-79 293.9
Cone3ag1500 . 72 232 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.4 9.8e-52 201.1
Cone10ag1432 . 72 220 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.9 2.4e-50 196.4
Cone3ag0756 . 71 239 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.2 1.1e-47 187.6
Cone1ag1761 . 62 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 59.5 3.3e-47 186.0
Cone10ag0745 . 79 180 CCAAT-HAP5 Transcription Factor Family AT5G63470 84.3 6.8e-45 178.3
Cone10ag1432 . 33 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 6.8e-64 241.1
Cone3ag1500 . 47 201 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.9 4.4e-63 238.4
Cone10ag0745 . 50 208 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.0 5.1e-51 198.4
Cone3ag0756 . 71 200 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.6 4.3e-50 195.3
Cone13ag0228 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone19ag0213 . 36 159 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.6e-50 194.9
Cone1ag1761 . 62 178 CCAAT-HAP5 Transcription Factor Family AT1G56170 80.3 1.2e-49 193.7
Cone1ag0827 . 1 299 CCAAT-HAP5 Transcription Factor Family AT3G12480 52.3 7.2e-62 235.0
Cone5ag0992 . 1 297 CCAAT-HAP5 Transcription Factor Family AT3G12480 53.6 6.1e-61 231.9
Cone12ag0815 . 4 128 CCAAT-HAP5 Transcription Factor Family AT5G43250 64.8 1.9e-38 156.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008681 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45467 PF00076 RRM_1 7.40E-11 CL0221 Cone TF