Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0827 ATGAAGAAGAAGCTCGACACCCGTTTTCCAGCGGCTCGAATCAAAAAGATAATGCAAGCAGATGAGGATGTAGGGAAAATAGCATTAGCAGTTCCTGTTTTAGTTTCCAAAGCATTGGAATTGTTTCTCCAAGACCTTTGTGATCGTACATATGAGATCACGCTTGAGAGAGGAGCCAAGACGATGAATTCAATGCATTTAAAACACTGTGTACAGAGCTATAATGTTTTTGATTTCCTGAGGGAAATTGTCAGCAGGGTTCCTGATTATGGCCATGGTCACTGTTCGTCAGATGCTGCTGATGATAAAAAGAAAAGGAAACCCACTGGTGATGAATGCAATGACAGCGATGAAGAGTTGAAGAAGAGCAAGATGCATGAGATGTCCCACCACAGCAGCAGGGGTGGTGGTGGAAGAGGAAGAGGCAGGGGCCGAGGCCGAGGCCGAGGCCGTGGACGGGCAAATCGAACTGCAGAAAGAGAGACTTGCCATCACGATCGGATCGAATCCAAGCCATCCATTCCTCTACAGAACAACAGCAGCAGCAAACAAAACTCGTGTCCTAACATGCTTATTGATAACAGTTTCATCCCAGAGTCGAAAGAATTGTCAAGAGAAAGTGTCTCAGCAAGCAATGAAGCTAACAACCCTCCAGCACCACCTACTCAAAATATCGACCTAAATGCGGACTCAAACGGGAATTACGAGGACCCCACCAAGGTGGCCCCGGCAGCTGAGCCACCTGGCCCCGCAACGGCAGGGCCTAGCACAGAAACTAAACACGAAGAGTACCCAGGCTGGTCTCTTGCCGACGTGGACAAGATGAACATAGACCCCGTTCATCTTGCACAGCTTACTACGAGATTAGACGAGGGCGATGAAGACTATGATGAGGAAGAGTGA 903 48.17 MKKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTMNSMHLKHCVQSYNVFDFLREIVSRVPDYGHGHCSSDAADDKKKRKPTGDECNDSDEELKKSKMHEMSHHSSRGGGGRGRGRGRGRGRGRGRANRTAERETCHHDRIESKPSIPLQNNSSSKQNSCPNMLIDNSFIPESKELSRESVSASNEANNPPAPPTQNIDLNADSNGNYEDPTKVAPAAEPPGPATAGPSTETKHEEYPGWSLADVDKMNIDPVHLAQLTTRLDEGDEDYDEEE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54103338 54107934 - Conep01aG0087000.1 Cone1ag0827 431518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0827 300 MobiDBLite consensus disorder prediction 91 272 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 201 235 - -
Cone1ag0827 300 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 179 IPR050568 GO:0001046(PANTHER)|GO:0005634(PANTHER)|GO:0016251(PANTHER)
Cone1ag0827 300 MobiDBLite consensus disorder prediction 152 171 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 136 151 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 172 193 - -
Cone1ag0827 300 SUPERFAMILY Histone-fold 3 95 IPR009072 GO:0046982(InterPro)
Cone1ag0827 300 FunFam dr1-associated corepressor homolog 1 86 - -
Cone1ag0827 300 MobiDBLite consensus disorder prediction 95 134 - -
Cone1ag0827 300 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Cone1ag0827 300 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0385 Cone-Chr1:3344233 Cone1ag0827 Cone-Chr1:54103338 8.60E-58 transposed
Cone5ag1421 Cone-Chr5:8944071 Cone1ag0827 Cone-Chr1:54103338 3.11E-59 transposed
Cone1ag0827 Cone-Chr1:54103338 Cone5ag0992 Cone-Chr5:4277530 5.72E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45467 PF00076 RRM_1 7.40E-11 CL0221 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0827 K21752 - mdm:103409560 286.574