Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0832 ATGGCTGATGCTAGTCCAAGGACCGACATCTCCACAGATGGAGACACAGATGAAAAAAACCAGAGGTTTGATATGGGTCAAAATACTCTAGTGGCTTATGATTCCAGTGACAGATCAAAAGATAGATCTGATCAGAAGACTCTACGTAGGCTTGCACAAAATCGTGAGGCTGCTAGAAAAAGCCGGTTGAGGAAAAAAGCATATGTGCAACAACTAGAAAGTAGTCGTTTAAAGTTAACCCAATTGGAGCAAGAGCTTCAACGAGCTCGACAGCAGGGTATCTTCATATCAAATGGAGCTGACCAGCCCCATTCAATGAGTGGAAATGGGGCCATGACATTTGATGTAGAATATGCACGTTGGCTGGAGGAGCAAAACCGTCAAATCAACGAACTGAGAGCGGCTGTCAACAATCACGCAGCCAAAGCCGATGTATTCCATCTATTGTCCGGCATGTGGAAAACACCGGCTGAGAGATGCTTCTTATGGCTTGGTGGCTTCCGTTCATCAGATCTCCTTAAGCTTCTTGTAAATCAGTTGGAGCCTCTAACGGAGCAGCAATTGGTTGGTCTCACTAACTTGCAGCAATCATCACAACAGGCTGAAGATGCCTTATCACAAGGGATGGAGGCGTTGCAACAGTCATTGGCTGAGACATTATCCAGCGGGTCCCTCGGTTCCTCGGGTTCATCCACCAATGTCGCTAACTACATGGGTCAGATGGCCATGGCCATGGGTAAACTAGGAACCCTTGAAGGATTTATTTGCCAGGCTGACAATTTACGGCAGCAAACACTGCAACAAATGCATCGGATTTTGACAACCCGTCAATCGGCTCGAGCGCTTCTTGCTATACAGGATTATTTCTCAAGGTTACGGGCTCTCAGTTCACTCTGGCTAGCCCGCCCAAAAGAGTAG 918 47.06 MADASPRTDISTDGDTDEKNQRFDMGQNTLVAYDSSDRSKDRSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNGADQPHSMSGNGAMTFDVEYARWLEEQNRQINELRAAVNNHAAKADVFHLLSGMWKTPAERCFLWLGGFRSSDLLKLLVNQLEPLTEQQLVGLTNLQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSTNVANYMGQMAMAMGKLGTLEGFICQADNLRQQTLQQMHRILTTRQSARALLAIQDYFSRLRALSSLWLARPKE 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54142561 54147352 + Conep01aG0087500.1 Cone1ag0832 431523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0832 305 Pfam Seed dormancy control 137 177 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone1ag0832 305 SUPERFAMILY Leucine zipper domain 46 89 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0832 305 Coils Coil 65 92 - -
Cone1ag0832 305 ProSiteProfiles DOG1 domain profile. 61 302 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone1ag0832 305 MobiDBLite consensus disorder prediction 1 48 - -
Cone1ag0832 305 SMART brlzneu 42 105 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0832 305 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 49 64 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0832 305 Gene3D - 45 96 - -
Cone1ag0832 305 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 44 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone1ag0832 305 Coils Coil 122 142 - -
Cone1ag0832 305 FunFam BZIP family transcription factor 45 94 - -
Cone1ag0832 305 PANTHER TRANSCRIPTION FACTOR TGA9 139 305 - -
Cone1ag0832 305 Pfam bZIP transcription factor 46 86 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0832 Cone-Chr1:54142561 Cone3ag0017 Cone-Chr3:109811 2.01E-148 dispersed
Cone1ag0832 Cone-Chr1:54142561 Cone5ag0986 Cone-Chr5:4227304 1.30E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45468 PF04734 Ceramidase_alk 1.20E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0832 K14431 - rcu:8270850 489.574