Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0847 ATGGCATCATCTTCATCGAACTCCCCATGCGCAGCCTGCAAGTTTCTTCGCCGGAAGTGCCAACCGGAGTGCGTCTTCGCGCCCTACTTTCCTCCGGACCAGCCGCAGAAGTTCGCAAACGTTCACAAAGTGTTCGGAGCAAGCAACGTAAGCAAGCTCCTTAACGAACTGCACCCTCACCAGAGAGAAGACGCGGTCAACTCTCTCGCCTACGAAGCCGACATGCGGCTGCGGGACCCAGTCTACGGCTGCGTCGGTGTAATCTCTCTCCTCCAGCACCAGCTCCGGCAGCTTCAGATGGACCTTACCTGCGCTAAGTCCGAGCTCTCTAAGTACCAGAATTTGGGCTTAACTAGCCACCATAGCCTCATAGCGGCGCAGAATGGTCATCTAGGGTTTAATCTGATTGGCGGGGTCAACGCTGGCAATTGGCCGGAACAGCAGAATGGCCACTATCATCATCACCAGTTGTTTCCGAGGGACCCACAGCAGATCGTGATGAGGAGTTATGATCATGGCGGGTCGAATCATTATGATGGAGGGAGTGCTCTTTTGGCTATGAATGTTTCGGCAAGTATCGGCCAGCTCAGTCAGTTCCAGCAACCGGCTAGGGCAGCTGCCGGAGATGATCACCGCCGTACCATCGATCCCTCTTAG 657 55.1 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVSKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSELSKYQNLGLTSHHSLIAAQNGHLGFNLIGGVNAGNWPEQQNGHYHHHQLFPRDPQQIVMRSYDHGGSNHYDGGSALLAMNVSASIGQLSQFQQPARAAAGDDHRRTIDPS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54241388 54242044 + Conep01aG0089000.1 Cone1ag0847 431538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0847 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 147 - -
Cone1ag0847 218 Coils Coil 88 115 - -
Cone1ag0847 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Cone1ag0847 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0160 Cone-Chr13:1004955 Cone1ag0847 Cone-Chr1:54241388 2.24E-53 dispersed
Cone16ag0939 Cone-Chr16:9541773 Cone1ag0847 Cone-Chr1:54241388 2.84E-57 dispersed
Cone19ag0159 Cone-Chr19:905693 Cone1ag0847 Cone-Chr1:54241388 1.41E-53 dispersed
Cone1ag0847 Cone-Chr1:54241388 Cone6ag1377 Cone-Chr6:11057520 2.37E-56 dispersed
Cone1ag0847 Cone-Chr1:54241388 Cone5ag0965 Cone-Chr5:4129039 8.51E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45469 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0847 - - - 0.0