Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone1ag0851 | ATGGAGTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGACGACAATGACAATGAATTCTACAGCGGCGCCGATGATGATGCTGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCCGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACCGTGCTTTCCATTTCAAATGTTGCGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTAAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTAGGACAGTTGGGTTACTGGAGAAACCAATTGTTGATTATTCAAATGATAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCTTGATAGGATTCGTGCTGCTGCCTGTGGTCATCCATTTTGCAGTGCATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCTGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGCGTTGCTGTCGGTCAGGATATGGTTAATTTGCTGGCTCCTAATGAAGATAAGAAGAAGTATACTCGCTACTTTATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGCTGTGATTACGCTGTGGATTTTATTGTTGGCAGCGGAAGCTGTGATGTTACTTGCCGCTGTTCATTTAGCTTTTGCTGGAATTGTACTGAGGAGGCTCATCGCCCAGTTGACTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCTGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAATGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCATGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCAAAGCAGGAGGGTGTTTACGACGATGCTGAAAAGCGAAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCCATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTTATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACGTATGCATATGGATATTATCTTCCAGAACATGAACATGCCAAGAGACAGTTCTTTGAATATTTGCAAGGTGAAGCTGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGTCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAAGTTCAAAGAGCATGGGAGGTGGCAGCAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACAGCTTCCAGATCAAGCAGTTCAAGTCGAAATATCGATGACTTGGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATACCAGGTCAGCATCCTTCTGCCAGATGTGCCATCAGCAGAGGTAA | 1785 | 45.49 | MESEDEFDMHDAHDDDDDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISNVAASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLEKPIVDYSNDRELTCGICFETYPLDRIRAAACGHPFCSACWAGYISTSINDGPGCLMLRCPDPSCGVAVGQDMVNLLAPNEDKKKYTRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSGSCDVTCRCSFSFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMASSKSMGGGSSRGKNGKGKGTASRSSSSSRNIDDLDHWSCEHCTFANTRSASFCQMCHQQR | 594 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 54266495 | 54278817 | + | Conep01aG0089400.1 | Cone1ag0851 | 431542 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone1ag0851 | 594 | Gene3D | - | 269 | 524 | - | - | |
Cone1ag0851 | 594 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 77 | 114 | IPR048962 | - | |
Cone1ag0851 | 594 | CDD | BRcat_RBR_ANKIB1 | 218 | 282 | - | - | |
Cone1ag0851 | 594 | MobiDBLite | consensus disorder prediction | 523 | 564 | - | - | |
Cone1ag0851 | 594 | FunFam | RBR-type E3 ubiquitin transferase | 274 | 524 | - | - | |
Cone1ag0851 | 594 | SMART | ibrneu5 | 211 | 273 | IPR002867 | GO:0008270(InterPro) | |
Cone1ag0851 | 594 | SMART | ibrneu5 | 277 | 347 | IPR002867 | GO:0008270(InterPro) | |
Cone1ag0851 | 594 | CDD | Rcat_RBR_ARI7-like | 296 | 350 | - | - | |
Cone1ag0851 | 594 | SMART | zf_4 | 569 | 593 | IPR001876 | - | |
Cone1ag0851 | 594 | CDD | RING-HC_ARI6-like | 139 | 200 | - | - | |
Cone1ag0851 | 594 | SUPERFAMILY | Ran binding protein zinc finger-like | 569 | 594 | IPR036443 | - | |
Cone1ag0851 | 594 | SUPERFAMILY | RING/U-box | 136 | 223 | - | - | |
Cone1ag0851 | 594 | ProSiteProfiles | Zinc finger RING-type profile. | 142 | 186 | IPR001841 | - | |
Cone1ag0851 | 594 | Pfam | IBR domain | 295 | 335 | - | - | |
Cone1ag0851 | 594 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 79 | 401 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Cone1ag0851 | 594 | ProSitePatterns | Zinc finger RanBP2-type signature. | 571 | 590 | IPR001876 | - | |
Cone1ag0851 | 594 | MobiDBLite | consensus disorder prediction | 529 | 562 | - | - | |
Cone1ag0851 | 594 | SUPERFAMILY | RING/U-box | 212 | 280 | - | - | |
Cone1ag0851 | 594 | SUPERFAMILY | RING/U-box | 292 | 340 | - | - | |
Cone1ag0851 | 594 | Pfam | IBR domain, a half RING-finger domain | 211 | 273 | IPR002867 | GO:0008270(InterPro) | |
Cone1ag0851 | 594 | ProSiteProfiles | TRIAD supradomain profile. | 138 | 351 | IPR044066 | - | |
Cone1ag0851 | 594 | Gene3D | - | 566 | 594 | - | - | |
Cone1ag0851 | 594 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 567 | 594 | IPR001876 | - | |
Cone1ag0851 | 594 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 224 | IPR013083 | - | |
Cone1ag0851 | 594 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cone1ag0851 | 594 | FunFam | RBR-type E3 ubiquitin transferase | 136 | 225 | - | - | |
Cone1ag0851 | 594 | Pfam | Ariadne domain | 360 | 523 | IPR045840 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone14ag0574 | Cone-Chr14:2840263 | Cone1ag0851 | Cone-Chr1:54266495 | 4.40E-307 | dispersed | |
Cone15ag0588 | Cone-Chr15:2993013 | Cone1ag0851 | Cone-Chr1:54266495 | 8.00E-298 | dispersed | |
Cone1ag0851 | Cone-Chr1:54266495 | Cone3ag1137 | Cone-Chr3:29958169 | 6.07E-56 | dispersed | |
Cone1ag0851 | Cone-Chr1:54266495 | Cone5ag0961 | Cone-Chr5:4100867 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone1ag0851 | K11968 | - | csv:101218052 | 1013.45 |