Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0851 ATGGAGTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGACGACAATGACAATGAATTCTACAGCGGCGCCGATGATGATGCTGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCCGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACCGTGCTTTCCATTTCAAATGTTGCGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTAAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTAGGACAGTTGGGTTACTGGAGAAACCAATTGTTGATTATTCAAATGATAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCTTGATAGGATTCGTGCTGCTGCCTGTGGTCATCCATTTTGCAGTGCATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCTGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGCGTTGCTGTCGGTCAGGATATGGTTAATTTGCTGGCTCCTAATGAAGATAAGAAGAAGTATACTCGCTACTTTATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGCTGTGATTACGCTGTGGATTTTATTGTTGGCAGCGGAAGCTGTGATGTTACTTGCCGCTGTTCATTTAGCTTTTGCTGGAATTGTACTGAGGAGGCTCATCGCCCAGTTGACTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCTGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAATGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCATGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCAAAGCAGGAGGGTGTTTACGACGATGCTGAAAAGCGAAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCCATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTTATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACGTATGCATATGGATATTATCTTCCAGAACATGAACATGCCAAGAGACAGTTCTTTGAATATTTGCAAGGTGAAGCTGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGTCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAAGTTCAAAGAGCATGGGAGGTGGCAGCAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACAGCTTCCAGATCAAGCAGTTCAAGTCGAAATATCGATGACTTGGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATACCAGGTCAGCATCCTTCTGCCAGATGTGCCATCAGCAGAGGTAA 1785 45.49 MESEDEFDMHDAHDDDDDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISNVAASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLEKPIVDYSNDRELTCGICFETYPLDRIRAAACGHPFCSACWAGYISTSINDGPGCLMLRCPDPSCGVAVGQDMVNLLAPNEDKKKYTRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSGSCDVTCRCSFSFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMASSKSMGGGSSRGKNGKGKGTASRSSSSSRNIDDLDHWSCEHCTFANTRSASFCQMCHQQR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54266495 54278817 + Conep01aG0089400.1 Cone1ag0851 431542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0851 594 Gene3D - 269 524 - -
Cone1ag0851 594 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 77 114 IPR048962 -
Cone1ag0851 594 CDD BRcat_RBR_ANKIB1 218 282 - -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 523 564 - -
Cone1ag0851 594 FunFam RBR-type E3 ubiquitin transferase 274 524 - -
Cone1ag0851 594 SMART ibrneu5 211 273 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 SMART ibrneu5 277 347 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 CDD Rcat_RBR_ARI7-like 296 350 - -
Cone1ag0851 594 SMART zf_4 569 593 IPR001876 -
Cone1ag0851 594 CDD RING-HC_ARI6-like 139 200 - -
Cone1ag0851 594 SUPERFAMILY Ran binding protein zinc finger-like 569 594 IPR036443 -
Cone1ag0851 594 SUPERFAMILY RING/U-box 136 223 - -
Cone1ag0851 594 ProSiteProfiles Zinc finger RING-type profile. 142 186 IPR001841 -
Cone1ag0851 594 Pfam IBR domain 295 335 - -
Cone1ag0851 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 401 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone1ag0851 594 ProSitePatterns Zinc finger RanBP2-type signature. 571 590 IPR001876 -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 529 562 - -
Cone1ag0851 594 SUPERFAMILY RING/U-box 212 280 - -
Cone1ag0851 594 SUPERFAMILY RING/U-box 292 340 - -
Cone1ag0851 594 Pfam IBR domain, a half RING-finger domain 211 273 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 ProSiteProfiles TRIAD supradomain profile. 138 351 IPR044066 -
Cone1ag0851 594 Gene3D - 566 594 - -
Cone1ag0851 594 ProSiteProfiles Zinc finger RanBP2 type profile. 567 594 IPR001876 -
Cone1ag0851 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 224 IPR013083 -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 1 32 - -
Cone1ag0851 594 FunFam RBR-type E3 ubiquitin transferase 136 225 - -
Cone1ag0851 594 Pfam Ariadne domain 360 523 IPR045840 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0574 Cone-Chr14:2840263 Cone1ag0851 Cone-Chr1:54266495 4.40E-307 dispersed
Cone15ag0588 Cone-Chr15:2993013 Cone1ag0851 Cone-Chr1:54266495 8.00E-298 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone3ag1137 Cone-Chr3:29958169 6.07E-56 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone5ag0961 Cone-Chr5:4100867 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0851 K11968 - csv:101218052 1013.45