Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0851 ATGGAGTCGGAGGATGAGTTCGACATGCATGATGCTCACGACGATGACGACGACAATGACAATGAATTCTACAGCGGCGCCGATGATGATGCTGCCGCCGTAGACAGCGACGATGCTGATGCCGCCGATTACGTTTTCATTGTTAATGATTCCGATGATTCCGATGAAATCGTCTCGCATCGGCGCCAGAACTTTACCATCTTGAGTGAGGCAGAGATACATCAGTGCCAAGAGGCTGATATAATGAGAATATCAACCGTGCTTTCCATTTCAAATGTTGCGGCTAGCATCCTGCTTCGCTATTACAATTGGACTGTAAGTAAAGTTCATGATGAGTGGTTTGCAGATGAAGAAAAGGTTCGTAGGACAGTTGGGTTACTGGAGAAACCAATTGTTGATTATTCAAATGATAGAGAACTAACATGTGGTATCTGTTTTGAAACCTATCCTCTTGATAGGATTCGTGCTGCTGCCTGTGGTCATCCATTTTGCAGTGCATGTTGGGCAGGCTATATTAGCACATCCATTAATGATGGTCCTGGATGTCTGATGTTGCGATGCCCTGATCCATCATGTGGCGTTGCTGTCGGTCAGGATATGGTTAATTTGCTGGCTCCTAATGAAGATAAGAAGAAGTATACTCGCTACTTTATCAGATCTTATGTTGAAAACAACAGGAAGGTCAAATGGTGTCCGGCTCCTGGCTGTGATTACGCTGTGGATTTTATTGTTGGCAGCGGAAGCTGTGATGTTACTTGCCGCTGTTCATTTAGCTTTTGCTGGAATTGTACTGAGGAGGCTCATCGCCCAGTTGACTGTAGCACTGTGGCCAAATGGATATTGAAGAATAGCGCTGAGTCAGAAAATATGAATTGGATTTTGGCTAATTCGAAGCCTTGTCCAAAATGCAAGCGGCCGATAGAGAAAAATCAAGGGTGTATGCATATTACTTGCACACCACCATGTAAATTTGAGTTTTGCTGGCTTTGCCTTGGGGCATGGTCGGACCATGGTGAGAGAACTGGGGGGTTTTATGCATGTAACCGTTATGAAACAGCAAAGCAGGAGGGTGTTTACGACGATGCTGAAAAGCGAAGAGAGATGGCCAAGAATTCTCTGGAGAGGTACACTCATTATTATGAAAGATGGGCAACAAATCAGTCGTCTAGGCAAAAGGCACTGGGTGACCTCCATCAAATGCAAACAGTCCATCTGGAGAAGCTCAGTGACATACAGTGCCAACCCGAGTCTCAGCTGAAGTTTATAACTGAAGCCTGGCTTCAGATAGTTGAGTGTAGGAGAGTTCTTAAATGGACGTATGCATATGGATATTATCTTCCAGAACATGAACATGCCAAGAGACAGTTCTTTGAATATTTGCAAGGTGAAGCTGAGTCTGGCTTGGAGAGGCTGCATCAATGTGCTGAGAAGGAGCTACAGGTTCACCTCAATGCAGAAGGTCCATCAAAAGATTTCAATGAGTTCCGCACCAAACTTGCTGGGCTAACCAGTGTAACTAGAAACTACTTCAAGAACTTGGTGCGAGCACTGGAGAACGGCCTCTCAGATGTAGACTCACGTGGTGGATGTAGCAGAATGGCAAGTTCAAAGAGCATGGGAGGTGGCAGCAGTAGGGGTAAAAATGGAAAAGGCAAGGGCACAGCTTCCAGATCAAGCAGTTCAAGTCGAAATATCGATGACTTGGATCACTGGTCTTGTGAACATTGCACCTTTGCCAATACCAGGTCAGCATCCTTCTGCCAGATGTGCCATCAGCAGAGGTAA 1785 45.49 MESEDEFDMHDAHDDDDDNDNEFYSGADDDAAAVDSDDADAADYVFIVNDSDDSDEIVSHRRQNFTILSEAEIHQCQEADIMRISTVLSISNVAASILLRYYNWTVSKVHDEWFADEEKVRRTVGLLEKPIVDYSNDRELTCGICFETYPLDRIRAAACGHPFCSACWAGYISTSINDGPGCLMLRCPDPSCGVAVGQDMVNLLAPNEDKKKYTRYFIRSYVENNRKVKWCPAPGCDYAVDFIVGSGSCDVTCRCSFSFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALGDLHQMQTVHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQVHLNAEGPSKDFNEFRTKLAGLTSVTRNYFKNLVRALENGLSDVDSRGGCSRMASSKSMGGGSSRGKNGKGKGTASRSSSSSRNIDDLDHWSCEHCTFANTRSASFCQMCHQQR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54266495 54278817 + Conep01aG0089400.1 Cone1ag0851 431542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0851 594 Gene3D - 269 524 - -
Cone1ag0851 594 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 77 114 IPR048962 -
Cone1ag0851 594 CDD BRcat_RBR_ANKIB1 218 282 - -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 523 564 - -
Cone1ag0851 594 FunFam RBR-type E3 ubiquitin transferase 274 524 - -
Cone1ag0851 594 SMART ibrneu5 211 273 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 SMART ibrneu5 277 347 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 CDD Rcat_RBR_ARI7-like 296 350 - -
Cone1ag0851 594 SMART zf_4 569 593 IPR001876 -
Cone1ag0851 594 CDD RING-HC_ARI6-like 139 200 - -
Cone1ag0851 594 SUPERFAMILY Ran binding protein zinc finger-like 569 594 IPR036443 -
Cone1ag0851 594 SUPERFAMILY RING/U-box 136 223 - -
Cone1ag0851 594 ProSiteProfiles Zinc finger RING-type profile. 142 186 IPR001841 -
Cone1ag0851 594 Pfam IBR domain 295 335 - -
Cone1ag0851 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 401 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cone1ag0851 594 ProSitePatterns Zinc finger RanBP2-type signature. 571 590 IPR001876 -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 529 562 - -
Cone1ag0851 594 SUPERFAMILY RING/U-box 212 280 - -
Cone1ag0851 594 SUPERFAMILY RING/U-box 292 340 - -
Cone1ag0851 594 Pfam IBR domain, a half RING-finger domain 211 273 IPR002867 GO:0008270(InterPro)
Cone1ag0851 594 ProSiteProfiles TRIAD supradomain profile. 138 351 IPR044066 -
Cone1ag0851 594 Gene3D - 566 594 - -
Cone1ag0851 594 ProSiteProfiles Zinc finger RanBP2 type profile. 567 594 IPR001876 -
Cone1ag0851 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 224 IPR013083 -
Cone1ag0851 594 MobiDBLite consensus disorder prediction 1 32 - -
Cone1ag0851 594 FunFam RBR-type E3 ubiquitin transferase 136 225 - -
Cone1ag0851 594 Pfam Ariadne domain 360 523 IPR045840 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0851 K11968 - - csv:101218052 1013.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0574 Cone-Chr14:2840263 Cone1ag0851 Cone-Chr1:54266495 4.40E-307 dispersed
Cone15ag0588 Cone-Chr15:2993013 Cone1ag0851 Cone-Chr1:54266495 8.00E-298 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone3ag1137 Cone-Chr3:29958169 6.07E-56 dispersed
Cone1ag0851 Cone-Chr1:54266495 Cone5ag0961 Cone-Chr5:4100867 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone10ag1148 . 165 591 ARIADNE family AT4G34370 70.0 7.8e-174 607.4
Cone3ag1137 . 166 605 ARIADNE family AT4G34370 66.7 2.2e-168 589.3
Cone10ag1148 . 59 543 ARIADNE family AT2G16090 74.6 1.5e-213 739.6
Cone3ag1137 . 59 543 ARIADNE family AT2G16090 73.4 5.8e-210 727.6
Cone10ag1148 . 26 546 ARIADNE family AT3G27710 60.0 2.2e-178 622.9
Cone3ag1137 . 26 545 ARIADNE family AT3G27710 59.2 1.4e-175 613.6
Cone10ag1148 . 45 523 ARIADNE family AT3G27720 53.2 2.5e-136 483.0
Cone3ag1137 . 45 524 ARIADNE family AT3G27720 52.3 2.8e-135 479.6
Cone5ag0961 . 65 539 ARIADNE family AT1G05890 72.8 1.3e-219 760.0
Cone1ag0851 . 63 537 ARIADNE family AT1G05890 72.6 4.9e-219 758.1
Cone14ag0574 . 40 512 ARIADNE family AT1G05890 74.0 6.0e-217 751.1
Cone15ag0588 . 1 514 ARIADNE family AT1G05890 64.0 1.2e-209 726.9
Cone1ag0851 . 23 594 ARIADNE family AT1G65430 72.8 1.7e-256 882.5
Cone5ag0961 . 22 596 ARIADNE family AT1G65430 71.9 9.1e-255 876.7
Cone14ag0574 . 7 566 ARIADNE family AT1G65430 69.7 1.1e-239 826.6
Cone15ag0588 . 16 574 ARIADNE family AT1G65430 67.8 1.8e-231 799.3
Cone5ag0961 . 49 458 ARIADNE family AT2G31780 54.9 6.6e-144 508.1
Cone1ag0851 . 47 456 ARIADNE family AT2G31780 54.1 3.6e-142 502.3
Cone14ag0574 . 36 432 ARIADNE family AT2G31780 56.9 5.8e-140 495.0
Cone15ag0588 . 1 439 ARIADNE family AT2G31780 51.9 7.8e-137 484.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72