Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0874 ATGCAGAGGCAGAGTCATTTCTTCTTTCTCCTCTGCTTTTGCATAATTTCCCCCCCTCTTGCTTTTGCTGATGATGGTGCTGATCACCATGAATTGTCAACCTTGCTGTCAATAAAATCAACCCTCATTGACCCTTTGAACTTCCTGAAAGATTGGAAGTCTCAAACAAACTCAACCGAAGAGAAGAATACCTGGCACTATTGTTCCTGGACAGGAATACTCTGCAACTCCAATGGCTTTGTTGAAAAACTAGACCTGTCCAATATGAATCTGAGTGGCTCCATTTCAGACAGCATTCAAGAACTTAAGAGCCTTTCTTACCTCAACATTTCTTGTAATGGGTTCTCTTCTTCTTTGCCTAAATCTCTACCAAATCTCACTTCACTCAAAAACATTGACTTGAGTCAGAACGACTTCATAGGCAGCTTCCCAAGTGGTCTAATTGGAGGAGCTTCCGCTTTGACTTCAGTCAACGCATCGAGCAACAATTTCGTCGGAAGTCTTCCCGAAGATCTCGCCAATGCATCATCGCTCGAGATATTAGATGTTAGAGGGAACTTCTTTCAAGGCTCAGTTCCTACTTTCTTGAAGAACTTGCAGAAGTTGAAGTTTCTTGGTTTAGCTGGAAACAATTTTATTGGAAGAATTCCTAGTGAGCTTGGCCAACTTTCTTCTTTAGAGGCTATGATTTTAGGATACAATGGATTTGAAGGCGGAATTCCGAAAGAATTTGGAAATCTTACAAATCTTGAGTATTTAGATTTAGCAGTGGGGAGCCTTGAAGGTGAAATTCCAGCTGAATTGAGTAGACTTATGAAACTCAATACAGTTTATTTGTACAGAAATCATTTTTCCGGAAAGATCCAGTCAGTAATCGGTAACATTACTTCACTGGTTTATCTAGATCTTTCTGATAATTTGATTTCAGGAGAGATTCCAGAAGAAGTTGCAGAATTAAAGAGTTTGCAGCTTTTGAACTTAATGTGTAACAATCTCACCGGTCCAATCCCGAGCAAGCTGGCTAAGTTGACCAACTTAGAAGTGCTTGGTTTGTGGGAAAATTCACTGACAGGTTCTTTACCGTTTGATCTTGGCCAGAATTCTCCATTGCAATGGTTGGATGTATCTTCAAATTTACTATCAGGTGAGATCCCAGATGGTTTATGTAAAAATGGTAATCTCACTAAACTCATCCTCTTTAATAACTCTTTCTCGGGTCCGATCCCAATAGGCCTTTCGACTTGTTTGTCATTGGTCCGAGTTAGAATTCAAAACAATCTCGTATATGGAACAATTCCGGTCGGATTCGGTAATCTTCCAATCCTCCAAAGGCTAGAATTATCCCATAACAATCTCACCGGAAAAATCCCGGCAGACATTTCTTTATCCACATCACTTTCTTTCATTGATGTTTCTTCAAACCACCTTCAATTCTCTCTCCCTTACAACATCTTCTCCATTCCGAATCTTCAAACCTTCATGGCTGCTAATAACTACTTGGAAGGGAATATACCGAACGAGTTTCAAGACTGCCCTTCTTTGTCTGTGCTCGATTTATCAAGCAATCAATTTTCCGGGACAATCCCGGAAAGTATTGCTTCGTGTGAAAGGCTAGTAAATCTTAACCTCAGGAAAAACGAGTTTAACGGACCAATCCCTAGAGCTATAGCCACAATGCCAACTTTAGCAATGCTCGATCTGTCCAACAATTCTCTTACCGGGCATATTCCCGGAAATTTTGGTTCTTCACCGGCCCTGGAGATGTTAAACCTGTCTTATAACAAACTGGAGGGACCAGTTCCTAGAAATGGCATTCTAATGACCATAAATCCCAATGACCTTATCGGAAATCCCGGACTTTGTGGAGGAGTACTTCCGCCTTGTAATAGAAGCTTTTCTTCGACAGTCAGAAAGATAAAGATTAGGCGAATTGATCACATTGTGAAAGGACTGATCATTGGAATTTGTACAGTTTTCATTCTAGGCCTTGCATTTTTTACGGGCAGGTCATTATATCAAAGATGGTACCTTTACAACAGTTTCTTCTATGATTGGTTCAAGAAGAGCTATGAAGAATGGCCATGGAGATTAGTAGCATTCCAAAGAGTCAGCTTCACTACTAGTGACATCCTAGCCTGCATAAAGGAATCCAACATTATCGGCATGGGTGGGACCGGGATTGTTTACAAAGTCGAGACTTTCGGGCAGCCCGAAACAGTTGCTGTCAAGAAGCTATGGAGATCTCATACAACAGATATTGAAAACGGGCATGATTTGCTAGGGGAAGTGAATCTTCTAGGGCGGTTAAGGCACCGGAATATTCTCCGGCTTATGGGGTATCTTCACAATGAGACAGACTTGATGATATTGTACGAGTATATGCGAAATGGAAACCTTGGAGAAGCACTGCATGGGAAAGAGCAGGATCAGAAGTTGCTAGTTGATTGGGTTTTGAGGTATAACATTGCAGTTGGAGTAGCTCAAGGATTGAACTATCTTCACCATGATTGTCACCCTGCAGTTATTCATAGAGATATCAAGTCGAATAATATATTGCTCGATGCGCATTTCGAGGCAAGGATTGCAGATTTCGGGTTGGCGAAAATAATGGTCCCTAAGAATGAAACAGTTTCTATGGTGGTAGGGTCTTACGGATATATTGCCCCCGAATATGGATATTCTCTGAAAGTGGATGAGAAGACCGATATATACAGCTATGGGGTGGTGCTTTTGGAGCTTCTGACCGGAAAATTGCCGGTAGATCATGAGTTTGGAGAAGGTGTGAATATTGTAGAATGGGTTCGGAGAAGGATTAAGAGCAGAGCCATGGAAGAAGTTTTAGACCCAGATGTAGCAGGTCAATGCAAACATGTTCAAGAAGAAATGCTTCTTGTTCTAAGAATCGCACTTCTCTGTACTGCAAAACTTCCCAAGGAAAGACCATCTATGAGGGATGTAATAACAATGCTTGGAGAAGCTAAGCCGAGAAGGAAAAGTGTCTGTCAAAATGGAGTGCCAGATGCTGCCAAAGAGAAGCCTATTTTCAACGCCTCACCAGTTACAGGCCTTCTTTAA 3075 41.43 MQRQSHFFFLLCFCIISPPLAFADDGADHHELSTLLSIKSTLIDPLNFLKDWKSQTNSTEEKNTWHYCSWTGILCNSNGFVEKLDLSNMNLSGSISDSIQELKSLSYLNISCNGFSSSLPKSLPNLTSLKNIDLSQNDFIGSFPSGLIGGASALTSVNASSNNFVGSLPEDLANASSLEILDVRGNFFQGSVPTFLKNLQKLKFLGLAGNNFIGRIPSELGQLSSLEAMILGYNGFEGGIPKEFGNLTNLEYLDLAVGSLEGEIPAELSRLMKLNTVYLYRNHFSGKIQSVIGNITSLVYLDLSDNLISGEIPEEVAELKSLQLLNLMCNNLTGPIPSKLAKLTNLEVLGLWENSLTGSLPFDLGQNSPLQWLDVSSNLLSGEIPDGLCKNGNLTKLILFNNSFSGPIPIGLSTCLSLVRVRIQNNLVYGTIPVGFGNLPILQRLELSHNNLTGKIPADISLSTSLSFIDVSSNHLQFSLPYNIFSIPNLQTFMAANNYLEGNIPNEFQDCPSLSVLDLSSNQFSGTIPESIASCERLVNLNLRKNEFNGPIPRAIATMPTLAMLDLSNNSLTGHIPGNFGSSPALEMLNLSYNKLEGPVPRNGILMTINPNDLIGNPGLCGGVLPPCNRSFSSTVRKIKIRRIDHIVKGLIIGICTVFILGLAFFTGRSLYQRWYLYNSFFYDWFKKSYEEWPWRLVAFQRVSFTTSDILACIKESNIIGMGGTGIVYKVETFGQPETVAVKKLWRSHTTDIENGHDLLGEVNLLGRLRHRNILRLMGYLHNETDLMILYEYMRNGNLGEALHGKEQDQKLLVDWVLRYNIAVGVAQGLNYLHHDCHPAVIHRDIKSNNILLDAHFEARIADFGLAKIMVPKNETVSMVVGSYGYIAPEYGYSLKVDEKTDIYSYGVVLLELLTGKLPVDHEFGEGVNIVEWVRRRIKSRAMEEVLDPDVAGQCKHVQEEMLLVLRIALLCTAKLPKERPSMRDVITMLGEAKPRRKSVCQNGVPDAAKEKPIFNASPVTGLL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54387053 54390521 - Conep01aG0091700.1 Cone1ag0874 431565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0874 1024 SMART serkin_6 714 990 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0874 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524(InterPro)
Cone1ag0874 1024 SUPERFAMILY RNI-like 206 583 - -
Cone1ag0874 1024 SUPERFAMILY Protein kinase-like (PK-like) 705 990 IPR011009 -
Cone1ag0874 1024 ProSiteProfiles Protein kinase domain profile. 714 997 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 104 126 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 393 415 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 177 199 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 513 535 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 297 318 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 201 223 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 370 390 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine Rich Repeat 82 102 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 FunFam MDIS1-interacting receptor like kinase 1 798 1007 - -
Cone1ag0874 1024 Gene3D Ribonuclease Inhibitor 193 291 IPR032675 -
Cone1ag0874 1024 Pfam Protein kinase domain 716 987 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone1ag0874 1024 SMART LRR_typ_2 343 367 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 439 463 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 559 583 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 295 319 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 199 223 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 126 150 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 511 535 IPR003591 -
Cone1ag0874 1024 SMART LRR_typ_2 102 125 IPR003591 -
Cone1ag0874 1024 Pfam Leucine rich repeat N-terminal domain 30 76 IPR013210 -
Cone1ag0874 1024 PANTHER LEUCINE RICH REPEAT KINASE 2 330 992 IPR051420 -
Cone1ag0874 1024 Gene3D Transferase(Phosphotransferase) domain 1 798 1010 - -
Cone1ag0874 1024 Gene3D Ribonuclease Inhibitor 389 632 IPR032675 -
Cone1ag0874 1024 Gene3D Ribonuclease Inhibitor 28 192 IPR032675 -
Cone1ag0874 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 187 287 - -
Cone1ag0874 1024 Gene3D Ribonuclease Inhibitor 296 386 IPR032675 -
Cone1ag0874 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 28 186 - -
Cone1ag0874 1024 SUPERFAMILY L domain-like 29 255 - -
Cone1ag0874 1024 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 370 632 - -
Cone1ag0874 1024 Gene3D Phosphorylase Kinase; domain 1 714 797 - -
Cone1ag0874 1024 Pfam Leucine rich repeat 418 476 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 Pfam Leucine rich repeat 537 596 IPR001611 GO:0005515(InterPro)
Cone1ag0874 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0874 Cone-Chr1:54387053 Cone1ag1071 Cone-Chr1:55317892 1.31E-110 dispersed
Cone18ag0828 Cone-Chr18:5537819 Cone1ag0874 Cone-Chr1:54387053 2.96E-183 transposed
Cone1ag0874 Cone-Chr1:54387053 Cone5ag0565 Cone-Chr5:2414973 2.83E-196 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82484 PF03514 GRAS 2.70E-107 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0874 - - - 0.0