Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0891 ATGATCTCCATCGCTGCTTCTAATCCCCGCGAGACGACAACCCAGAACAAGCCGGATCAACAGGCGTCGTCGAATAACATCAGTTCCCAAACTACCCATGTTTTCCGATCCAAGTTACCCGACATACCCATTCCCAATCACCTCCCTTTACACACCTACTGCTTCGAAAACCTCTCTCAATTCTCCGACAAGCCATGTTTGATCGTCGGCTCAACTGGAAAATCCTACACTTTCTCGGAGACCCATCTCATCTGTCGGAAAACCGCCGTTGGATTGTCCGGCCTCGGAATTAAGAAGAACGATGTCGTCATGGTCCTACTCCAGAATTGCGCCGAGTTCGTCTTCACCTTCATGGCCGCCTCCATGATCGGTGCCGTCGTCACCACCGCTAACCCGTTCTACACCTCAGCCGAGCTTTTCAAACAGCTCAAAACATCCAAGGCGAAACTCATCATAACCCAATCTCAATACGTCTATAAGCTCAGATCAGACGACCTAAAACTAGGCGAGGATTTCGCCGTTATCACAATAGACGACCCGCCGGAGAATTGCCTTCATTTTTCAGTGATTTCGGAGGCGGACGAAAACAACGTCGTTATAGAAGACCTAACGGATAAAATCTTCGACCCAAACGATGCCATTGCATTACCGTTTTCGTCGGGCACAACTGGGTTACCAAAGGGTGTGATTTTAACCCACAAGAGTTTGATTACGAGTCTGGCTCAGCAAGTCGACGGCGAAAATCCCAACCTGTATTTGAAACAAGACGATGTTGTTTTATGCGTGCTTCCCATGTTTCACATATACGCTCTGAACAGTGTGCTTCTGTGCTCCCTCAGAGCTGGAGCGGCGGTTCTGTTGATGCAGAAGTTTGAGATTGGGACGTTGTTGGAGCTGATTCAGCGCCACCGTGTGTCCGTGGCAGCAGTGGTGCCGCCACTGGTGCTGGCTCTGGCGAAGAATCCTATGGTGGCGGATTTTGACTTGAGCTCGATTAGAGTGGTGCTCTCTGGGGCGGCGCCGCTCGGGAAGGAGCTGGAGGAGGCGTTGAGGAGCCGTGTGCCTCAGGCTATTCTTGGACAGGGTTACGGGATGACTGAGGCGGGGCCGGTGTTATCAATGTGCCTAGCATTTGCTAAGCAGCCATTCCCAACCAAGTCAGGTTCATGTGGGACCGTGGTTAGAAATGCAGAGCTTAAGATTATCGATCCGGAAACCGGGTTCTCGCTCGACTACAATCAACCCGGAGAGATTTGTATTCGCGGGTCCCAGATTATGAAAGGATACTTGAACGATGAAGAGGCCACAGCAAACACGATTGACGTAGAGGGATGGCTTCATACTGGTGACATCGGGTATGTAGATGACAATGAGGAGGTTTTCATAGTTGACCGAGTCAAGGAGCTCATCAAATTCAAAGGCTTTCAGGTCCCACCAGCAGAGCTTGAGGCCCTTCTTTTAAGCCATCCATCAATTGCAGATGCAGCTGTTGTCTCGCAAAAAGATGAAGTAGCTGGTGAAGTTCCTGTTGCATTTGTGGTCAGATCAAATAGTTTTGAACTTACCGAGGATGCTGTCAAACAGTTCATAGCTAAGCAGGTGGTGTTCTACAAGAAATTGCACAGGGTCTATTTTGTTCATGCAATTCCGAGGTCTCCTGCCGGAAAGATTTTGAGAAAAGATCTGAGGGCCAAGCTAGAAACAGCTTCTTCTTCCTCCTCCTCTTAA 1728 49.48 MISIAASNPRETTTQNKPDQQASSNNISSQTTHVFRSKLPDIPIPNHLPLHTYCFENLSQFSDKPCLIVGSTGKSYTFSETHLICRKTAVGLSGLGIKKNDVVMVLLQNCAEFVFTFMAASMIGAVVTTANPFYTSAELFKQLKTSKAKLIITQSQYVYKLRSDDLKLGEDFAVITIDDPPENCLHFSVISEADENNVVIEDLTDKIFDPNDAIALPFSSGTTGLPKGVILTHKSLITSLAQQVDGENPNLYLKQDDVVLCVLPMFHIYALNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRHRVSVAAVVPPLVLALAKNPMVADFDLSSIRVVLSGAAPLGKELEEALRSRVPQAILGQGYGMTEAGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKIIDPETGFSLDYNQPGEICIRGSQIMKGYLNDEEATANTIDVEGWLHTGDIGYVDDNEEVFIVDRVKELIKFKGFQVPPAELEALLLSHPSIADAAVVSQKDEVAGEVPVAFVVRSNSFELTEDAVKQFIAKQVVFYKKLHRVYFVHAIPRSPAGKILRKDLRAKLETASSSSSS 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54515305 54519006 - Conep01aG0093400.1 Cone1ag0891 431582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0891 575 Pfam AMP-binding enzyme 56 430 IPR000873 -
Cone1ag0891 575 Gene3D - 467 571 IPR045851 -
Cone1ag0891 575 Gene3D - 25 466 IPR042099 -
Cone1ag0891 575 Pfam AMP-binding enzyme C-terminal domain 481 556 IPR025110 -
Cone1ag0891 575 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Cone1ag0891 575 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 563 - GO:0016207(PANTHER)|GO:0016405(PANTHER)
Cone1ag0891 575 FunFam Long-chain-fatty-acid--CoA ligase FadD 36 467 - -
Cone1ag0891 575 MobiDBLite consensus disorder prediction 1 27 - -
Cone1ag0891 575 CDD 4CL 44 562 - -
Cone1ag0891 575 SUPERFAMILY Acetyl-CoA synthetase-like 40 568 - -
Cone1ag0891 575 FunFam 4-coumarate--CoA ligase 2 468 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0891 Cone-Chr1:54515305 Cone4ag1085 Cone-Chr4:9393443 4.46E-246 dispersed
Cone1ag0891 Cone-Chr1:54515305 Cone5ag0595 Cone-Chr5:2547552 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0891 K01904 - rcu:8280463 898.271