Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0894 ATGGGTACAAGAACACAGCAACGATGCCGAGAAGAGGACAATGACGAGCACCTAGCTGGTGGTCGCGGTGCCGCCACAATTTCCGGCCAATCCTTGTCCATGAGTGGCAGCATCGGTTCACCTTCCAGTCGTAGCGAGCAAACCATGGCTACGCCTGCTAGCGACAACACTTTTCTCCGATTAAATGGCCTCGACATTCATGGCGACGATGCAAGGTCCCAAGGCGGTAACAAGAAGAAAAAGAGGGGTCAACGAGCGGTTGGAGGCGATAAGAGTGGGAGAGGACTACGCCAATTCAGCATGAAAGTTTGTGAGAAAGTACAGAGCAAGGGAAGAACAACCTACAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCGGATCCCAGGAACAGTATTGCTTCCCCGGATCAGCAATATGATGAGAAAAACATTCGACGAAGGGTGTATGATGCCCTGAATGTTCTGATGGCTATGGACATTATATCAAAGGATAAAAAAGAGATACAATGGAAGGGTCTCCCCCGTACTACCTTGAATGATCTTGAAGAACTAAAGACAGAACGACTGGGACTTAGAAATAGGATTGAGAAGAAAGCTGCGTACTTGCAAGAACTGGAGGAACAGTTCATAGGTCTTCAGAATCTCATACAGCGGAATGAGCAGTTATGCAGCTCTGGAAATGCTCCCAGTGGAGGTGTGGCTTTACCGTTTATTCTGGTTCAGACACGGCCCCATGCAACTGTAGAGGTAGAGATATCAGAAGATATGCAACTGGTACATTTCGACTTCAACAGCACCCCTTTTGAGCTCCATGACGACAACTACGTATTGAAAGGGATGAAATTCTGTGAAAGGCCACAGGGTGATAATATCCCACCTCAAAATCTTATCATCAATGGAGGGGAAGGAGGTCCCACCACGCCTATGGTGTACCAACAACACCATATCCCTCTTCCATCAGCTTCAACGCCTCTAAGGACTCCAACCTCGCCCCCTATACCTGGCATCCTAAAAGCACGCGTCAAGCATGAGCAACCTTGA 1044 48.18 MGTRTQQRCREEDNDEHLAGGRGAATISGQSLSMSGSIGSPSSRSEQTMATPASDNTFLRLNGLDIHGDDARSQGGNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVQSKGRTTYNEVADELVAEFADPRNSIASPDQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTTLNDLEELKTERLGLRNRIEKKAAYLQELEEQFIGLQNLIQRNEQLCSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKGMKFCERPQGDNIPPQNLIINGGEGGPTTPMVYQQHHIPLPSASTPLRTPTSPPIPGILKARVKHEQP 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54531426 54534903 - Conep01aG0093700.1 Cone1ag0894 431585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0894 347 SMART DP_2 180 344 IPR014889 -
Cone1ag0894 347 SUPERFAMILY Winged helix DNA-binding domain 94 174 IPR036390 -
Cone1ag0894 347 Coils Coil 189 223 - -
Cone1ag0894 347 PIRSF Txn_factor_DP 4 346 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cone1ag0894 347 Gene3D - 86 178 IPR036388 -
Cone1ag0894 347 Gene3D Transcription factor DP 179 298 IPR038168 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 1 19 - -
Cone1ag0894 347 CDD DP_DD 178 281 IPR014889 -
Cone1ag0894 347 Pfam E2F/DP family winged-helix DNA-binding domain 94 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0894 347 PANTHER TRANSCRIPTION FACTOR DP 24 319 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cone1ag0894 347 FunFam Transcription factor-like protein DPB 179 303 - -
Cone1ag0894 347 SMART E2F_TDP_2 91 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0894 347 Pfam Transcription factor DP 181 286 IPR014889 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 26 58 - -
Cone1ag0894 347 SUPERFAMILY E2F-DP heterodimerization region 179 300 IPR037241 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 1 94 - -
Cone1ag0894 347 FunFam Transcription factor-like protein DPB 86 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0894 K04683 - - csv:101216863 538.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0894 Cone-Chr1:54531426 Cone5ag0599 Cone-Chr5:2566800 1.45E-234 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone5ag0599 . 69 283 E2F-DP Transcription Factor Family AT5G02470 53.7 1.9e-59 226.9
Cone1ag0894 . 70 282 E2F-DP Transcription Factor Family AT5G02470 52.6 7.4e-59 224.9
Cone1ag0555 . 22 454 E2F-DP Transcription Factor Family AT5G22220 57.3 4.3e-117 419.1
Cone5ag1327 . 9 457 E2F-DP Transcription Factor Family AT5G22220 55.9 8.9e-115 411.4
Cone3ag0151 . 28 454 E2F-DP Transcription Factor Family AT5G22220 51.4 2.5e-101 366.7
Cone10ag0135 . 28 457 E2F-DP Transcription Factor Family AT5G22220 51.1 1.2e-95 347.8
Cone3ag0151 . 24 460 E2F-DP Transcription Factor Family AT2G36010 57.9 2.3e-129 459.9
Cone10ag0135 . 24 463 E2F-DP Transcription Factor Family AT2G36010 56.5 5.8e-125 445.3
Cone1ag0555 . 17 460 E2F-DP Transcription Factor Family AT2G36010 52.9 5.2e-118 422.2
Cone5ag1327 . 17 443 E2F-DP Transcription Factor Family AT2G36010 54.3 5.2e-118 422.2
Cone1ag0555 . 138 414 E2F-DP Transcription Factor Family AT1G47870 50.5 1.3e-61 234.6
Cone13ag0116 . 2 371 E2F-DP Transcription Factor Family AT3G48160 53.8 2.2e-101 366.7
Cone19ag0118 . 4 373 E2F-DP Transcription Factor Family AT3G48160 52.7 5.9e-99 358.6
Cone2ag0880 . 27 400 E2F-DP Transcription Factor Family AT3G48160 53.8 3.0e-95 346.3
Cone16ag0130 . 6 379 E2F-DP Transcription Factor Family AT3G48160 52.1 3.1e-92 336.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45473 PF00022 Actin 3.00E-146 CL0108 Cone TF