Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0894 ATGGGTACAAGAACACAGCAACGATGCCGAGAAGAGGACAATGACGAGCACCTAGCTGGTGGTCGCGGTGCCGCCACAATTTCCGGCCAATCCTTGTCCATGAGTGGCAGCATCGGTTCACCTTCCAGTCGTAGCGAGCAAACCATGGCTACGCCTGCTAGCGACAACACTTTTCTCCGATTAAATGGCCTCGACATTCATGGCGACGATGCAAGGTCCCAAGGCGGTAACAAGAAGAAAAAGAGGGGTCAACGAGCGGTTGGAGGCGATAAGAGTGGGAGAGGACTACGCCAATTCAGCATGAAAGTTTGTGAGAAAGTACAGAGCAAGGGAAGAACAACCTACAATGAGGTTGCAGATGAACTTGTAGCGGAGTTTGCGGATCCCAGGAACAGTATTGCTTCCCCGGATCAGCAATATGATGAGAAAAACATTCGACGAAGGGTGTATGATGCCCTGAATGTTCTGATGGCTATGGACATTATATCAAAGGATAAAAAAGAGATACAATGGAAGGGTCTCCCCCGTACTACCTTGAATGATCTTGAAGAACTAAAGACAGAACGACTGGGACTTAGAAATAGGATTGAGAAGAAAGCTGCGTACTTGCAAGAACTGGAGGAACAGTTCATAGGTCTTCAGAATCTCATACAGCGGAATGAGCAGTTATGCAGCTCTGGAAATGCTCCCAGTGGAGGTGTGGCTTTACCGTTTATTCTGGTTCAGACACGGCCCCATGCAACTGTAGAGGTAGAGATATCAGAAGATATGCAACTGGTACATTTCGACTTCAACAGCACCCCTTTTGAGCTCCATGACGACAACTACGTATTGAAAGGGATGAAATTCTGTGAAAGGCCACAGGGTGATAATATCCCACCTCAAAATCTTATCATCAATGGAGGGGAAGGAGGTCCCACCACGCCTATGGTGTACCAACAACACCATATCCCTCTTCCATCAGCTTCAACGCCTCTAAGGACTCCAACCTCGCCCCCTATACCTGGCATCCTAAAAGCACGCGTCAAGCATGAGCAACCTTGA 1044 48.18 MGTRTQQRCREEDNDEHLAGGRGAATISGQSLSMSGSIGSPSSRSEQTMATPASDNTFLRLNGLDIHGDDARSQGGNKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVQSKGRTTYNEVADELVAEFADPRNSIASPDQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTTLNDLEELKTERLGLRNRIEKKAAYLQELEEQFIGLQNLIQRNEQLCSSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKGMKFCERPQGDNIPPQNLIINGGEGGPTTPMVYQQHHIPLPSASTPLRTPTSPPIPGILKARVKHEQP 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54531426 54534903 - Conep01aG0093700.1 Cone1ag0894 431585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0894 347 SMART DP_2 180 344 IPR014889 -
Cone1ag0894 347 SUPERFAMILY Winged helix DNA-binding domain 94 174 IPR036390 -
Cone1ag0894 347 Coils Coil 189 223 - -
Cone1ag0894 347 PIRSF Txn_factor_DP 4 346 IPR015648 GO:0005667(InterPro)|GO:0051726(InterPro)
Cone1ag0894 347 Gene3D - 86 178 IPR036388 -
Cone1ag0894 347 Gene3D Transcription factor DP 179 298 IPR038168 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 1 19 - -
Cone1ag0894 347 CDD DP_DD 178 281 IPR014889 -
Cone1ag0894 347 Pfam E2F/DP family winged-helix DNA-binding domain 94 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0894 347 PANTHER TRANSCRIPTION FACTOR DP 24 319 IPR015648 GO:0000977(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0005667(InterPro)|GO:0006357(PANTHER)|GO:0051726(InterPro)
Cone1ag0894 347 FunFam Transcription factor-like protein DPB 179 303 - -
Cone1ag0894 347 SMART E2F_TDP_2 91 173 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cone1ag0894 347 Pfam Transcription factor DP 181 286 IPR014889 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 26 58 - -
Cone1ag0894 347 SUPERFAMILY E2F-DP heterodimerization region 179 300 IPR037241 -
Cone1ag0894 347 MobiDBLite consensus disorder prediction 1 94 - -
Cone1ag0894 347 FunFam Transcription factor-like protein DPB 86 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0894 Cone-Chr1:54531426 Cone5ag0599 Cone-Chr5:2566800 1.45E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45473 PF00022 Actin 3.00E-146 CL0108 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0894 K04683 - csv:101216863 538.88