Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone1ag0897 ATGATGAAGCTTCAAACATACGCGGGTCTAAGTTTGATTTCAACACTAGTAGTTATTTACCATGCATTTAGTAGTAGAGGCCAGTTTTACCCAGCAATGGTTTATCTGTCAACATCTAAGATCTGCCTTGTGCTTCTTCTCAACATGGGTCTGGTAGTCATGTGCATCTTATGGCAATTAACCAAGAAGGTATTCCTTGGTTCACTTCGAGAAGCTGAGATTGAGAGGCTTAACGAGCAATCATGGAGGGAGCTGATGGAAATCCTTTTTGCCATCACTATTTTTCGGCAGGATTTCTCGGTCACATTTCTTGCTATGGTCACAGCTCTCTTGTTAATCAAAGCTTTGCATTGGTTGGCTCAGAAAAGGGTTGAGTACATTGAAACCACTCCATCAGTACCCAGGTTGTCTCATATTCGGATTATTTTATTCTTGGGATTTCTTCTTGTCCTAGATGGCCTATTTCTGTACAGCTCTGTAAAGAATCTAATACAGACGCAGAAGGCTTCAGTTTCCCTATTCTTCTCATTCGAGTACATGATACTTGCAACCACGACCATATCAACCTTTGTGAAATATGTTTTCTATGTCAGTGACATGTTAATGGAGGGACAATGGGAAAAGAAATTTGTATACACATTTTACTTGGAACTTATTAGAGACTTGCTTCACTTATCTATGTATTTGTGCTTCTTTCTGGTGATATTCATGAACTATGGGGTGCCTCTGCACTTAATTCGGGAGCTGTATGAGACATTTAGGAACTTTAAGATCCGTATTGCTGATTACATTCGTTACCGAAAGATCACATCAAATATGAATGATCGTTTTCCAGAAGCAACACCAGAGGAACTTACTGCAAGCGACGCAACCTGCATTATTTGTCGTGAAGAAATGACAACAGCCAAGAAACTAATCTGCGGACATCTCTTTCATGTCCATTGCCTCCGGTCATGGCTGGAGAGACAGCACACTTGTCCAACCTGCAGAGCTCCAGTTGTTCCATCTGAAGGGACAAGCACAACTGGAGGTCAACATGGATTGCAGCCAGATGCAAATCAGCAGAGGACTGGAAGCACAGGTATGGCTGCACAGGGATCAGCAGGTAACAATGTGGCAGGGTATCATTTGACCCGCCATCAGGCCAAACTCCAAGCTGCAGCTGCAGCTGCCTCAATATATGAGAAGTCTTTCGTTTATCCTTCTGCAAACACACTAGTATGGTCACCTGGGTATGCTGTCGTACCTCAGATTCAAAGACCTTTACCCAACTCCAACAATTCAGAAACAAATGGAGAAAGTCTTTCTACAGCACAACCACAACATTTTGCTACCTCTGGTGGCCCTCCAAACTCATCGTTTTCTCAATTTTCGAATAGCTTTTTCGTTCCTCTTCAGTCACAAGGGGCCAATTTAAATGAGGGAGAGAGGCAAAATGGCATTTCAGGCTCTCAGCTTGAAGCTCAGAGAAGATTTCTTGAACACCAGATTGAGGTCCTGCAAAAACATATCCAACTTCTACAGAAGCCAAAAGTTGAGGAAGGCACGAATGTGAGACCCACAACATCTTCAGATATTAAAGGAAAAAATGCTGTATCTGCATCTTCTTCCTCCTCAGTCCTAGATTGTGGTCGCCATGGTGAAACGGATGAGATCTGA 1659 42.74 MMKLQTYAGLSLISTLVVIYHAFSSRGQFYPAMVYLSTSKICLVLLLNMGLVVMCILWQLTKKVFLGSLREAEIERLNEQSWRELMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPRLSHIRIILFLGFLLVLDGLFLYSSVKNLIQTQKASVSLFFSFEYMILATTTISTFVKYVFYVSDMLMEGQWEKKFVYTFYLELIRDLLHLSMYLCFFLVIFMNYGVPLHLIRELYETFRNFKIRIADYIRYRKITSNMNDRFPEATPEELTASDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRAPVVPSEGTSTTGGQHGLQPDANQQRTGSTGMAAQGSAGNNVAGYHLTRHQAKLQAAAAAASIYEKSFVYPSANTLVWSPGYAVVPQIQRPLPNSNNSETNGESLSTAQPQHFATSGGPPNSSFSQFSNSFFVPLQSQGANLNEGERQNGISGSQLEAQRRFLEHQIEVLQKHIQLLQKPKVEEGTNVRPTTSSDIKGKNAVSASSSSSVLDCGRHGETDEI 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 54544443 54549077 + Conep01aG0094000.1 Cone1ag0897 431588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone1ag0897 552 Pfam Ring finger domain 291 330 IPR001841 -
Cone1ag0897 552 SMART ring_2 292 329 IPR001841 -
Cone1ag0897 552 CDD RING-H2_synoviolin 289 330 - -
Cone1ag0897 552 MobiDBLite consensus disorder prediction 420 451 - -
Cone1ag0897 552 MobiDBLite consensus disorder prediction 511 552 - -
Cone1ag0897 552 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Cone1ag0897 552 MobiDBLite consensus disorder prediction 515 543 - -
Cone1ag0897 552 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Cone1ag0897 552 Coils Coil 483 503 - -
Cone1ag0897 552 MobiDBLite consensus disorder prediction 335 366 - -
Cone1ag0897 552 SUPERFAMILY RING/U-box 272 338 - -
Cone1ag0897 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Cone1ag0897 552 PANTHER RING ZINC FINGER PROTEIN 2 336 IPR050731 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0866 Cone-Chr15:6589679 Cone1ag0897 Cone-Chr1:54544443 9.62E-20 dispersed
Cone1ag0897 Cone-Chr1:54544443 Cone5ag0602 Cone-Chr5:2577987 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone1ag0897 K10601 - csv:101215351 771.926